Actions: nextstrain/nextclade_data Actions All workflows .github/workflows/data-curation.yml build-and-deploy Dependabot Updates update-sars-cov-2-datasets Management Caches Deployments All workflows Showing runs from all workflows 579 workflow runs Event Status Branch Actor Update ...
All official Nextclade datasets are available at https://github.com/nextstrain/nextclade_data. Workflow Usage The workflow can be run from the top level pathogen repo directory: nextstrain build nextclade Alternatively, the workflow can also be run from within the nextclade directory: cd nextclade ...
.github data data_output docs infra scripts tests/minimizers .editorconfig .env.example .gitignore README.md requirements.txt Repository files navigation README Code of conduct Nextclade datasets This repository contains Nextclade datasets and tools to maintain them. Documentation: Crea...
git clone git@github.com:<your_github_username>/nextclade_data Add changes to your forked repository, commit and submit a pull request to the upstream repository nextstrain/nextclade_data. When submitting, tick the checkbox "Allow edits from maintainers", so that nextstrain-bot and project maintai...
corneliusroemer deployed to refs/pull/200/merge May 16, 2024 14:27 — with GitHub Actions Active chore: rebuild [skip ci] d5012e4 anna-parker added a commit to GenSpectrum/nextclade-datasets that referenced this pull request Oct 15, 2024 Add folders from nextstrain/nextclade_data#200 565...
.github chore: remove failing Eslint github action Nov 5, 2020 3rdparty refactor: use local version of nlohman/json instead of conan package Mar 25, 2021 config/conan chore: remove unused emsdk via conan Jun 24, 2021 data data: update tree ...
Error in rule nextclade_dataset: ... 1: error sending request for url (https://data.master.clades.nextstrain.org/datasets/sars-cov-2/references/MN908947/versions/2023-02-01T12:00:00Z/files/reference.fasta): error trying to connect: Conne...
Note about the test data bit: -- I would use nextclade/datasetget as the test data but it's currently v2 and since the dataset format changed from v2 to v3,I can't use it as a formal test yet. I did run a test with v3 dataset but uncertain re: uploading it. 2024.09.03 nextclad...
.github .vscode data docker docs e2e packages_rs 3rdparty nextclade-cli src Cargo.toml nextclade-web nextclade paper scripts tools .all-contributorsrc .dockerignore .editorconfig .env.example .gitignore .nvmrc .readthedocs.yml .vercelignore CHANGELOG.md CONTRIBUTING.md Cargo.lock Car...
- `nextclade_hMPXV_NC_063383.1_2024-08-27--21-28-04Z.tar.gz`: A set of input data files required for Nextclade to run an analysis on MPOX. Previous format did not require `pathogen.json` file but from v3+ it is required. File was created with `nextclade dataset get -n MPXV --...