datasets download genome taxon "Arabidopsis thaliana" --dehydrated --filename Arabidopsis.genome.all.zip 下载下来之后解压开,有文件里有一个叫ncbi_dataset/fetch.txt,这个文件大概长这样: https://api.ncbi.nlm.nih.gov/datasets/fetch_h/R2V0UmVtb3RlRGF0YWZpbGU/eNqTyuRKz0tOytROKymw0tdPT83Lz00t1k_...
1.下载安装 其中datasets可以访问NCBI各种资源数据,dataformat可实现结果在各种格式中无缝切换。 也支持conda的方式: # 创建ncbi_datasets环境并安装ncbi-datasets-cli conda create -n ncbi_datasets -c conda-forge ncbi-datasets-cli 2.示例 # 下载基因信息并保存为example_gene_data_package.zip datasets download ...
NCBI基因组,蛋白质文件的下载 NCBI物种的基因组,蛋白质的下载常常会中断。 1.网页直接下载 2.Command-line tools 安装 condainstall conda-forge::ncbi-datasets-cli 运行 datasets download genome accession GCF_000001405.40 --dehydrated --filename human_GRCh38_dataset.zip 3.FTP 在存放所有物种的网页文件上下...
Install the NCBI Datasets command-line tools Install the latest version (CLI v16.x) of the NCBI Datasets CLI tools,datasetsanddataformat, using conda: conda install -c conda-forge ncbi-datasets-cli For other installation options, see our CLI toolsdownload and installinstructions. ...
conda一键完成: conda install ncbi-datasets-cli 这个工具还在活跃的开发中,基本上半个月就更新一个小版本,目前最新版是16.39.0 如果你直接搜索datasets,那个是huggingface旗下的用于机器学习模型训练的数据集,跟咱们今天介绍的不是一个东西,要分清楚哦。
conda-forge-webservices commented on Oct 19, 2024 conda-forge-webserviceson Oct 19, 2024 Contributor Hi! This is the friendly automated conda-forge-webservice. I just wanted to let you know that I started rerendering the recipe in #305. conda-forge-adminmentioned this on Oct 19, 2024 ...
Install the latest version (CLI v16.x) of the NCBI Datasets CLI tools, datasets and dataformat, using conda: conda install -c conda-forge ncbi-datasets-cli For other installation options, see our CLI tools download and install instructions. Use the NCBI Datasets command-line tools Use datasets...