(2014). Motif-based analysis of large nucleotide data sets using MEME-ChIP. Nat. Protoc., 9(6), 1428-1450.Ma, W., Noble, W. S. & Bailey, T. L. Motif-based analysis of large nucleotide data sets using MEME-ChIP. Nat. Protoc. 9, 1428-1450 (2014)....
输出位置: 默认值为 meme_out/目录。如果这个目录不存在,会新建一个。输出的文件会有meme.html,meme.xml, meme.txt, meme.xsl以及一些LOGO图片。当然你也可以设置输出的位置。 -o 输出目录名;如果已经存在的话不覆盖该目录; -oc 输出目录名;如...
(A) Foreground sets in TSMA are defined by differential gene expression analysis of RNA-seq or microarray datasets, usually by selecting statistically significantly upregulated and downregulated genes. The background set is all of the genes in the microarray platform or all of the measured genes in...
Graph classification is critically important to many real-world applications that are associated with graph data such as chemical drug analysis and social network mining. Traditional methods usually require feature engineering to extract... H Peng,J Li,Q Gong,... 被引量: 0发表: 2020年 Node, M...
We also developed a viewer named 'SALAD on ARRAYs' to view arbitrary microarray data sets of paralogous genes linked to the same dendrogram in a window. The SALAD database is a powerful tool for comparing protein sequences and can provide valuable hints for biological analysis. 展开 ...
* fimo - for scanning sequences with motifs, * mcast - for finding motif clusters, * meme-chip - for analysis of large DNA datasets like ChIPseq output, * spamo - for finding motif complexes by analysing motif spacing, * dreme - for discovery of short regular expression motifs, and that...
Figure 3: K-mer-Based Motif Analysis in Insect Species across Anopheles, Drosophila, and Glossina Genera and Its Application to Species Classification
Arabidopsis thalianaNew motifs for phosphorylation sites associated with calcium-dependent protein kinases were developed using 494 sites experimentally proved in mammalians. Subsequent motif-based search revealed consensus regions in -, -, and -tubulin from Arabidopsis thaliana. The analysis of selected ...
Conventional fold recognition techniques rely mainly on the analysis of the entire sequence of a protein. We present an MBA method to improve performance of any conventional sequence-based fold assignment. The method uses sequence motifs, such as those defined in the Prosite database, and the Swis...
摘要: This paper proposes a generalized motif-based method for detecting defects in 16 out of 17 wallpaper groups in 2D patterned texture. It assumes that most patterned texture can be decomposed into la...关键词:Defect detection Lattice Motif Patterned fabric Texture analysis Wallpaper group ...