Hello Monocle Makers, I wish to try Monocle 3 on our institution's linux-based compute cluster. But the admins are a bit hesitant to install it as it is still in the beta stage. We have R 3.5.0. I currently use Monocle 2, the latest vers...
devtools::install_github('cole-trapnell-lab/monocle3', dependencies = TRUE) Downloading GitHub repo cole-trapnell-lab/monocle3@HEAD These packages have more recent versions available. It is recommended to update all of them. Which would you like to update? 1: All 2: CRAN packages only 3: ...
run Runs the velocity analysis outputting a loomfilerun10x Runs the velocity analysisfora Chromium Sample run-dropest Runs the velocity analysis on DropEst preprocessed data run-smartseq2 Runs the velocity analysis on SmartSeq2 data(independent bamfileper cell)tools helper toolsforvelocyto velocyto run...
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It can work on the linux server system, but not work on my macos computer. The input file is the same. QiuyuLian commented Jun 21, 2023 Same error too. QiuyuLian commented Jun 21, 2023 I found if I specified "cluster_method = 'louvain'", it would work... There might be somethi...
I installed Monocle using devtools::install_github('cole-trapnell-lab/monocle3') which gave me this version of Monocle so if this has been solved in Monocle 3.1, would there be a way of pointing me to this version (sorry for the stupid request in advance)?andy...
Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 20.04.6 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0 locale:
There have been several iterations and bugfixes on combine_cds since this post. Can you please install the latest using devtools::install_github('cole-trapnell-lab/monocle3', ref="develop") and let me know if this is still an issue? hpliner added this to the v0.2.2 milestone May 13,...
在Linux系统上安装aspera并用其批量高速下载转录组数据,这个快很多,下载下来就是fq step2_质控 质控的方法很多,我这边用的是华大开发的soapnuke(自我感觉很好用哈哈哈哈)具体的安装方法和参数都可以在网上随便搜到哈 mkdir-p /share/home/sunxiao/HL/PRJNA701452/step1_SOAPnuke/SRR20950111&&\/share/home/sunxiao/...