phylogeneticsInvestigation into model selection has a long history in the statistical literature. As model-based approaches begin dominating systematic biology, increased attention has focused on how models should be selected for distance-based, likelihood, and Bayesian phylogenetics. Here, we review ...
Determining the most suitable model for phylogeny reconstruction constitutes a fundamental step in numerous evolutionary studies. Over the years, various criteria for model selection have been proposed, leading to debate over which criterion is preferabl
ModelFinder is a fast model-selection method that greatly improves the accuracy of phylogenetic estimates. Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in all such analyses.
Model Selection and Model Averaging in Phylogenetics Johan Nylander November 27, 2005 1 Key Concepts • Model selection - to use the data to select a model - should be an integral part of inference [4]. • The data generating or ”true” model (f ) has an infinite number of ...
In addition, we have done substantially more thinking about the issue and reading the literature since writing the first edition, and these activities have led to further insights. 展开 关键词: CiteSeerX citations Model selection and inference: a practical information-theoretic approach D R ...
Russel, Patricio Maturana, et al. “Model selection and parameter inference in phylogenetics using nested sampling.” Systematic biology 68.2 (2019): 219-233. beastier::remove_beaustier_folders()beastier::check_empty_beaustier_folders()
We argue that the most commonly implemented model selection approach, the hierarchical likelihood ratio test, is not the optimal strategy for model selection in phylogenetics, and that approaches like the Akaike Information Criterion (AIC) and Bayesian methods offer important advantages. In particular, ...
关键词 Model averaging / Model selection / Model comparison / Statistical phylogenetics / ModelTest / Phylogenetic model averaging / Phylogenetic model comparison / Substitution model / Site model 被引量 34 收藏 全部来源 免费下载 求助全文 Springer Springer (全网免费下载) Semantic Scholar Semantic ...
derived in many lineages independently. Using placentas as a model, we discuss the genetic basis for organ origins. We show that the evolution of placentas occurs by acquiring new functional attributes to existing tissues, changes in the patterning and development of tissues, and the evolution of...
In the most scientifically interesting case, i.e., when the compared models are distinct and nearly equally wrong, Bayesian model selection shows problematic polarized behavior: It tends to support one model with full force in some datasets, but support another model in other datasets. ...