Because the original values of Ψtlp are negative, log(− Ψtlp) are used in the models. Correlations are based on the phylogenetic generalized linear model (PGLM, solid line), with correlation coefficients r and P values for each model. The four sections are Yulania (white dots), ...
phylogenetic generalized linear mixed effect modelphylogenetic diversityphylogenetic occupancy modeltrait‐basedBiological communities are structured phylogenetically鈥攃losely related species are typically more likely to be found at the same sites. This may be, in part, because they respond similarly to ...
Phylogenetic generalized least square linear regression models (PGLS) on maximum absolute growth rate per day (AGR) against body mass at maximum growth (BMatMG, in gram) for different taxonomic groups.Jan Wern...
Abbreviations AF: Average frequency of occurrence BI: Bayesian inference DC: Number of distributed countries HF: Number of host families ML: Maximum likelihood NOC: Total number of occurrences PGLS: Phylogenetic generalized linear models PIC: Phylogenetically independent contrasts function ...
but allows for the dependent variable to take real values between 0 and 1 (it can be equivalently described as a generalized linear model with binomial family and logit link). For simplicity, we refer to these fractional logit models simply as “logistic models”. Our general approach to predi...
Generalized linear models (GLMs) and phylogenetic generalized estimation equations (GEEs) demonstrated that growth form and seed dispersal mode were strong drivers of germination. Our experimental study highlights that integrating plant key traits and phylogeny is critical to predicting seed germination ...
phylogenetic generalized linear mixed models (pglmm), which was originally included in thepezpackage. It has new model formula syntax that allows straightforward model set up, a faster version of maximum likelihood implementation via c++, and a Bayesian model fitting framework based on INLA. ...
[64]; in other words, residuals are phylogenetically correlated. Many recent approaches, including phylogenetic generalized linear mixed models (PGLMM) [65], Pagel’sλ[66] and Blomberg’sκ[67], expand upon Felsenstein’s PICs by incorporating extra parameters that correct for bias, and by ...
Abbreviations AF: Average frequency of occurrence; BI: Bayesian inference; DC: Number of distributed countries; HF: Number of host families; ML: Maximum likelihood; NOC: Total number of occurrences; PGLS: Phylogenetic generalized linear models; PIC: Phylogenetically independent contrasts function ...
Generalized linear mixed models (GLMMs) were employed to analyze the proportion of surviving, flowering, and fruiting plants per species and pot (Table 1; Appendix 2) and to evaluate the overall proportion of species and plants that survived per pot (Table 2; Appendix 2). We used the ...