DATABASESThe human gut microbiota produces diverse, extensive metabolites that have the potential to affect host physiology. Despite significant efforts to identify metabolic pathways for producing these microbial metabolites, a comprehensive metabolic pathway database for the human gut micr...
Each C2Card provides an overview of the knowledge of multiple pathway databases from the perspective of a specific gene, EC number or reaction of interest. A C2Card answers the basic question of which databases contain the entity of interest. Importantly, each card provides a concise overview of...
KEGG PATHWAY analysis represents molecular interaction, reaction and relation networks in metabolism, cellular process, human disease, drug discovery, etc. It is a reference database for metabolic pathway analysis also. So, we performed KEGG pathway analysis for weighted differentially coexpressed gene ...
Metabolic-Pathway-Based Subtype of TNBC Cell Lines, Related to Figure 5, Table S9. Comparison of Metabolic Genes Expression among Subtypes of Human TNBC Cell Lines (n = 24 in the CCLE Database), Related to Figure 5, Table S10. Comparison of Metabolite Abundance among Subtypes of Human TNBC...
Effects of acupuncture on the insulin signaling pathway and mitochondrial AMPK pathway in an animal model of type 2 diabetes mellitus: systematic evaluation and meta-analysis Fang Luo, Zhijun Ma, Hanhan Chen, Zhuoxuan Li, Junjie Feng, Chengguo Su and Jun Zhu ...
Bacteria can use n-hexadecane as a carbon source, but it remains incompletely understood whether n-hexadecane is transformed into metabolic intermediates prior to cellular uptake or not. We newly isolated a strain identified as Pseudomonas synxantha LSH-
KEGG pathway database - Kyoto University Bioinformatics Centre. [http://www.genome.jp/kegg/pathway.html], BioModels Database. [http://www.ebi.ac.uk/biomodels], MetaCyc Encyclopedia of Metabolic Pathways. [http://metacyc.org], Sridhar P, Kahveci T, Ranka S:An iterative algorithm for metab...
F. Metabolic pathway engineering for production of 1,2-propanediol and 1-propanol by Corynebacterium glutamicum. Biotechnol. Biofuels 8, 91 (2015). Article PubMed PubMed Central CAS Google Scholar Nakamura, C. E. & Whited, G. M. Metabolic engineering for the microbial production of 1,3-...
Results included a metabolic pathway map and impact value of metabolic pathway based on the KEGG database (http://www.kegg.com/) most relevant to the selected candidate metabolites. Raw P < 0.01 and impact > 0.01 meant the metabolic pathway was of statistical significance. The research flow ...
MetaCyc (Caspi et al., 2007): is a metabolic pathway database contains pathways from over 2816 different organisms. MetaCyc describes metabolic pathways, reactions, enzymes, and substrate compounds. The MetaCyc data were gathered from a variety of literature and on-line sources, and contain cita...