小鬼的MeRIPseqPipe分析拆解01-资源介绍 最近关注到一篇文献,发表了一个针对MeRIP Seq数据分析的整合流程,并将全部代码开源发布到了GitHub上,一起来看下这个资源,并进行步骤拆解。 文献信息 标题:MeRIPseqPipe: an integrated analysis pipeline for MeRIP-seq data based on Nextflow Doi:https://doi.org/10.1093/bi...
peaks注释基因的富集分析 clusterProfiler: GO enrichment analysis Analysis pipeline for MeRIP-seq Schematic diagram of the MeRIP-seq protocol Data analysis workflow 由于m6A-seq数据分析的原理与过程和ChIP-seq十分相似,所以这里略过前面的质控,简单说明比对和peak calling步骤,具体内容可以参考ChIP-seq分析流程 m6A...
Analysis pipeline for MeRIP-seq Schematic diagram of the MeRIP-seq protocol Data analysis workflow 由于m6A-seq数据分析的原理与过程和ChIP-seq十分相似,所以这里略过前面的质控,简单说明比对和peak calling步骤,具体内容可以参考ChIP-seq分析流程 m6A背景知识 ...
Analysis pipeline for MeRIP-seq Schematic diagram of the MeRIP-seq protocol Data analysis workflow 由于m6A-seq数据分析的原理与过程和ChIP-seq十分相似,所以这里略过前面的质控,简单说明比对和peak calling步骤,具体内容可以参考ChIP-seq分析流程 m6A背景知识 目前已知有100多种RNA修饰,涉及到mRNAs、tRNAs、rR...
With the rapid developmentof high-throughput sequencing technology, in-depth study of m6 A distributionand function relevance becomes feasible.Results: Here, we present a high-efficiency and user-friendly analysis pipeline calledMeRIP-PF for the signal identification of MeRIP-Seq data in reference to...
Infrastructure & Pipeline Setup Sequencing Data Analysis Biological Data Interpretation All Informatics Education Bringing Greater Insights, Answers, and Breakthroughs to Light See what is possible through the latest advances in high-throughput sequencing technology ...
Advanced Data Analysis Publications Arraystar m6A Single Nucleotide Arrays based on methyl-sensitive MazF RNase can locate the exact m6A site at single nucleotide resolution and quantify the fraction of modification. With these capabilities unachievable by other currently existing techniques, the arrays will...
[Analysis pipeline for MeRIP-seq](#title) - [m6A背景知识](#backgroud-knowledge) - [比对参考基因组](#map) - [Tophat](#tophat) - [HISAT2](#hisat2) @@ -36,6 +37,14 @@ 由于m6A-seq数据分析的原理与过程和ChIP-seq十分相似,所以这里略过前面的质控,简单说明比对和peak calling步骤,具体内...
MACS2参考ChIP-seq分析流程中的[peak calling](https://github.com/Ming-Lian/Memo/blob/master/ChIP-seq-pipeline.md#peak-calling)过程PeakRanger 2. PeakRanger``` peakranger ccat --format bam SRR1042594.sorted.bam SRR1042593.sorted.bam \ @@ -98,7 +98,7 @...
Analysis pipeline for MeRIP-seq 1 2 3Schematic diagram of the MeRIP-seq protocol Data analysis workflow Schematic diagram of the MeRIP-seq protocol <