git clone https://github.com/BGI-shenzhen/LDBlockShow.git chmod 755 configure ; ./configure; make; mv LDBlockShow bin/; # [rm *.o] Note:If failed to link,try tore-installthe librarieszlib Option 2: tar -zxvf LDBlockShowXXX.tar.gz cd LDBlockShowXXX; cd src; sh make.sh ## Linux...
git clone https://github.com/hewm2008/LDBlockShow.git cd LDBlockShow ; chmod 755 configure ; ./configure; make; mv LDBlockShow bin/; # [rm *.o] Note: If failed to link,try to re-install the libraries zlibOption 2:tar -zxvf LDBlockShowXXX.tar.gz cd LDBlockShowXXX; cd src; ...
wget https://github.com/BGI-shenzhen/LDBlockShow/archive/v1.33.tar.gztar -zxvfv1.33.tar.gz cd LDBlockShow-1.33/src/ sh make.sh cd ../bin/ 画LD图: LDBlockShow -InVCF 1000genomes.vcf.gz -OutPut file -Region chr11:2142000:2342000 -OutPdf 解释一下: LDBlockShow指LDBlockShow软件; 1000...
最近需要画LD block,之前一直用haploview软件画,haploview软件毛病比较多,比如不能有多态位点,输入的变异位点不能太多等。动不动就报错。 最近试了一下另外一个画LD block的软件LDBlockShow,比haploview好用许多。不需要自己剔除多态位点,直接输入vcf文件即可,简直就是心头好。 直接下载安装: wget https://github.com...
wget https://github.com/BGI-shenzhen/LDBlockShow/archive/v1.33.tar.gz tar -zxvf v1.33.tar.gzcdLDBlockShow-1.33/src/ sh make.shcd../bin/ 画LD图: LDBlockShow -InVCF 1000genomes.vcf.gz -OutPut file -Region chr11:2142000:2342000 -OutPdf ...
git clone https://github.com/BGI-shenzhen/LDBlockShow.git chmod 755 configure; ./configure; make; mv LDBlockShow bin/; # [rm *.o] 2) tar -zxvf LDBlockShowXXX.tar.gz cd LDBlockShowXXX; cd src; sh make.sh # or in Linux: make ; make clean ...
https://github.com/hewm2008/LDBlockShow/blob/main/LDBlockShow_Manual_Chinese.pdf https://blog.csdn.net/yijiaobani/article/details/127498536https://anaconda.org/bioconda/ldblockshow 本文由mdnice 扫码安装简书客户端 畅享全文阅读体验 扫码后在手机中选择通过第三方浏览器下载...
为了评估整体连锁程度，PopLDdecay是一个高效且已发表的工具。该软件不仅可以从GitHub获取，而且网上有丰富的教程和指南。在局部层次上，LDBlockShow提供了一种更为详细且直观的方式来查看特定基因区间内的连锁关系。该软件不仅能够与GWAS分析结果联合展示，还支持基因组注释文件的联合作图，并且具备子群体分析...
Breadcrumbs LDBlockShow / config.h.inTop File metadata and controls Code Blame 96 lines (65 loc) · 2.46 KB Raw /* config.h.in. Generated from configure.ac by autoheader. */ /* Define to 1 if you have the <inttypes.h> header file. */ #undef HAVE_INTTYPES_H /* Define to 1 if...
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files - LDBlockShow/config.status at master · wangpanqiao/LDBlockShow