Kyte-Doolittle hydrophobicity scaleMacromolecular dockingProtein-protein interactionsStructureHADDOCK is one of the few docking programs that can explicitly account for water molecules in the docking process. Its solvated docking protocol starts from hydrated molecules and a fraction of the resulting ...
B , Kyte and Doolittle hydropathy plots of RFCl (toppanel) and GLUT1 (bottom panel). The scale, in amino acid residues, is shown over the two ... KH Dixon,BC Lanpher,KJaesnonneCthhHiiu,... 被引量: 76发表: 0年 Finding alphabet indexing for decision trees over regular patterns: an...
Here, we introduce a simple water-mediated amino acid鈥揳mino acid contact probability scale derived from the Kyte-Doolittle hydrophobicity scale and assess its performance on the largest high-resolution dataset developed to date for solvated docking. Both scales yield high-quality docking results. ...