Kilosort4-Spike数据处理系列教程01: Kilosort4 GUI的使用 03:37 Kilosort4-Spike数据处理系列教程02: 创建一个channel map 03:38 Kilosort4-Spike数据处理系列教程03: 基于Phy可视化Spike 08:29 Kilosort4-Spike数据处理系列教程04: 基于Phy筛选神经元细胞 07:38 Kilosort4-Spike数据处理系列教程05: 典型神经...
Detailed instructions for interpreting results https://github.com/kwikteam/phy-contrib/blob/master/docs/template-gui.md. Cite As Marius Pachitariu (2025). Kilosort (https://github.com/cortex-lab/KiloSort), GitHub. Retrieved March 27, 2025. Requires Parallel Computing Toolbox required for GPU...
kilosort gui probe_view_box.py spikedetect.py tests test_parameters.py 3 changes: 2 additions & 1 deletion 3 kilosort/gui/probe_view_box.py Original file line numberDiff line numberDiff line change @@ -94,7 +94,8 @@ def set_active_layout(self, probe, template_args): def get_te...
git clone git@github.com:MouseLand/Kilosort.git conda env create -f environment.yml conda activate kilosort pip install -e Kilosort[gui] Then run all tests with: To run on GPU: pytest --gpu --runslow Omitting the--runslowflag will only run the faster unit tests, not the slower regressio...
64位按照的说明安装phy-contrib,这将提供模板GUI来显示数据并允许进行其他手动排序环境文件: Kilosort安装: 下载所有文件,并将它们一起放在计算机上的一个千分之一文件夹中 在您的Kilosort文件夹中创建一个“ RawData”文件夹,然后将要排序的文件放入该文件夹中。 在PLXMasterFile.m文件中,将PATH变量编辑...
在用kilosort的GUI界面,将ns6转换成bin文件,长数据出现了数据丢失,短数据没问题,什么原因呀显示全部 关注者1 被浏览59 关注问题写回答 邀请回答 好问题 添加评论 分享 暂时还没有回答,开始写第一个回答下载知乎客户端 与世界分享知识、经验和见解...
name: kilosort channels: - conda-forge - pytorch - nvidia dependencies: - python=3.9.* - pip - psutil - numpy>=1.20.0,<2.0.0 - scipy - scikit-learn - tqdm - numba - faiss-cpu - libblas=*=*mkl - pytest # GUI - matplotlib - pip: - pyqtgraph>=0.13.0 - qtpy - pyqt6 - pyqt...
EDIT: I've also looked at the data for Shank 1 and Shank 2, and they look the same. There doesn't seem to be a discernible reason why one works and teh other doesn't. I've also run Shank 1 through template-gui and it sorts fine. See attached Shank 1: Shank 2: Author seacrit...
Hi, when I am preprocessing Neuropixel phase 3a or NP 1.0 data in KiloSort 3 I get an error from CUDA in the KS GUI. This error happens after the screen response has lagged for a few minutes and I haven't been able to do any work in para...
To install kilosort and the GUI, runpython -m pip install kilosort[gui]. If you're on a zsh server, you may need to usepython -m pip install "kilosort[gui]". Instead of 5, you can install the minimal version of kilosort withpython -m pip install kilosort. ...