KEGG PATHWAY database (the wiring diagram database) is the core of the KEGG resource, which contains the higher order functional information, including graphical representations of cellular processes, such as metabolism, membrane transport, signal transduction and cell cycle. A collection of pathway ma...
Reading KEGG annotation online: fail to download KEGG data... Error in download.KEGG.Path(species) : 'species' should be one of organisms listed in 'http://www.genome.jp/kegg/catalog/org_list.html'... In addition: Warning message: In utils::download.file(url, quiet = TRUE, method = ...
Dear author: Since the clusterProfiler is a very useful tools for GO and Kegg annotation.At present I want to use it to enrich for kegg result while only have the KO number ,So I want to convert the KO number to the pathway function,Is t...
Pinus halepensis__KEGG_annotationPinosio, SaraGonzálezMartínez, Santiago CBagnoli, FrancescaCattonaro, FedericaGrivet, DelphineMarroni, FabioLorenzo, ZaidaPausas, Juli GVerdú, MiguelVendramin, Giovanni G
与扩增子测序相比,宏基因组测序不仅对于物种鉴定精度更高,更能同时注释KEGG、CAZy、COG、CARD等功能数据库,获得数倍于扩增子测序的微生物组组成及功能信息。 今天继续大家分享宏基因测序的数据分析相关问题~ Q1:物种和功能对应关系如何查找? 答:以KEGG的注释结果为例:可查找结果文件7-FunctionAnnotation/1.KEGG/...
importosimportjsonimportreclassKOParser(object):def__init__(self,map):self.map=mapdefjson_parser(self):# check the existance of json fileifos.path.exists(self.map):withopen(self.map,'r')asf:ko_list=[]# convert json to dictmap_dict=json.load(f)# print(type(map_dict)) dictmaps=map...
KEGG annotation of DEGs among different tissues of paper mulberry.Peng XianjunTeng LinhongWang XiaomanWang YuchengShen Shihua
KEGG annotation of DGEs.Jinjing, ZhangAng, RenHui, ChenMingwen, ZhaoLiang, ShiMingjie, ChenHong, WangZhiyong, Feng
KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome. BMC Genomics. 2013;14:509.Dunlap, WC, Starcevic, A, Baranasic, D, Diminic, J, Zucko, J, Gacesa, R, Oppen, MJH, Hranueli, D, ...
gene annotationpathway mappingKAASKEGG is a database resource ( http://www.genome.jp/kegg/ ) that provides all knowledge about genomes and their relationships to biological systems such as cells and whole organisms as well as their interactions with the environment. KEGG is categorized in terms ...