富集得到的结果如下,geneID为ensembl gene ID >ego#over-representationtest##...@organismHomosapiens#...@ontologyGOALL#...@keytypeENSEMBL#...@genechr[1:1000]"ENSG00000259250" "ENSG00000255717" ...#...pvaluesadjustedby'BH'withcutoff<0.01#...81enrichedtermsfound'data.frame':81obs.of10variables...
代码语言:javascript 代码运行次数:0 运行 AI代码解释 >ego1 # over-representation test # #...@organism Homo sapiens #...@ontologyGOALL#...@keytypeENSEMBL#...@gene chr[1:1000]"ENSG00000259250""ENSG00000255717"...#...pvalues adjusted by'BH'withcutoff<0.01#...81enriched terms found'data.f...
Enriched KEGG pathways and GO terms by module genes.Suhua, ChangKechi, FangKunlin, ZhangJing, Wang
Moreover, the growing reliance on high-throughput experiments has resulted in a skewed distribution of functional protein annotations in databases, leaving a considerable number of bacterial proteins unexplored in terms of their functions [20]. In recent years, deep learning has emerged as a ...
@sarahalshammeryFor your information: though I don't fully know whether the results is what you expected (only in group A (602) enriched gene sets are found), but your code as such doesn't give an error for me. See also my session info for the versions ofclusterProfiler,DOSEandenrich...
>ego2# over-representation test##...@organism Homo sapiens#...@ontology GOALL#...@keytype ENSEMBL#...@gene chr [1:1000] "ENSG00000259250" "ENSG00000255717" "ENSG00000163328" ...#...pvalues adjusted by 'BH' with cutoff <0.01#...81 enriched terms found'data.frame':81obs.of10variabl...
>ego1# over-representation test##...@organismHomo sapiens#...@ontologyGOALL#...@keytypeENSEMBL#...@genechr [1:1000] "ENSG00000259250" "ENSG00000255717" ...#...pvalues adjusted by 'BH' with cutoff <0.01#...81 enriched terms found'data.frame':81obs. of10variables:$ ONTOLOGY : Facto...
Histogram of the most significantly enriched KO terms obtained from the KEGG enrichment analysis of DEGs.Wei, SongKeji, JiangFengying, ZhangYu, LinLingbo, Ma
Consistently enriched GO terms and KEGG pathways and their occurrence in the analyzed gene lists.Christian, J. Gröger
Differentiation cluster network based on functionally enriched GO terms and KEGG pathways.Viviana MeravigliaValerio AzzimatoLuca PiacentiniMattia ChiesaRupesh K. KesharwaniCaterina FratiMaurizio C. CapogrossiCarlo GaetanoGiulio PompilioGualtiero I. Colombo...