富集得到的结果如下,geneID为ensembl gene ID >ego#over-representationtest##...@organismHomosapiens#...@ontologyGOALL#...@keytypeENSEMBL#...@genechr[1:1000]"ENSG00000259250" "ENSG00000255717" ...#...pvaluesadjustedby'BH'withcutoff<0.01#...81enrichedtermsfound'data.frame':81obs.of10variables...
代码语言:javascript 代码运行次数:0 运行 AI代码解释 >ego1 # over-representation test # #...@organism Homo sapiens #...@ontologyGOALL#...@keytypeENSEMBL#...@gene chr[1:1000]"ENSG00000259250""ENSG00000255717"...#...pvalues adjusted by'BH'withcutoff<0.01#...81enriched terms found'data.f...
Enriched KEGG pathways and GO terms by module genes.Suhua, ChangKechi, FangKunlin, ZhangJing, Wang
@sarahalshammeryFor your information: though I don't fully know whether the results is what you expected (only in group A (602) enriched gene sets are found), but your code as such doesn't give an error for me. See also my session info for the versions ofclusterProfiler,DOSEandenrich...
The advent of high-throughput technologies has led to an exponential increase in uncharacterized bacterial protein sequences, surpassing the capacity of manual curation. A large number of bacterial protein sequences remain unannotated by Kyoto Encycloped
Distributed under the terms of theMIT license,Reconstructoris free and open source software. About This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and benchmarking scores for reconstructor models. Reconstructor is a COBRApy...
>ego2# over-representation test##...@organism Homo sapiens#...@ontology GOALL#...@keytype ENSEMBL#...@gene chr [1:1000] "ENSG00000259250" "ENSG00000255717" "ENSG00000163328" ...#...pvalues adjusted by 'BH' with cutoff <0.01#...81 enriched terms found'data.frame':81obs.of10variabl...
>ego1# over-representation test##...@organismHomo sapiens#...@ontologyGOALL#...@keytypeENSEMBL#...@genechr [1:1000] "ENSG00000259250" "ENSG00000255717" ...#...pvalues adjusted by 'BH' with cutoff <0.01#...81 enriched terms found'data.frame':81obs. of10variables:$ ONTOLOGY : Facto...
Histogram of the most significantly enriched KO terms obtained from the KEGG enrichment analysis of DEGs.Wei, SongKeji, JiangFengying, ZhangYu, LinLingbo, Ma
Consistently enriched GO terms and KEGG pathways and their occurrence in the analyzed gene lists.Christian, J. Gröger