However, for genotype files without rsids models, there are arguments that change it to varIDs.预测模型是带有两个表的SQLite数据库,权重和其他。权重表有列gene rsid varID ref_allele eff_allele weight,其中每个变体都有一个格式为chr_pos_ref_eff_build的ID。例如,snp rs115095900的变体ID为chr10_...
When using our individual-level tools, we constructed prediction models for 14 phenotypes from UK Biobank21,22, for which we have access to phenotype and genotype data via Application 21432. These phenotypes are: body mass index (data field 21001), forced vital capacity (3062), height50, impe...
To fit individual level Bayesian model (ibrm()), at least the phenotype, numeric genotype (n*m,nis the number of individuals,mis the number of SNPs) should be provided. Users can load the phenotype and genotype data that are coded from other software byread.table()to fit model, note th...
We demonstrated the efficiency of IGG3 by simulation tests, which could rapidly merge genotypes in tens of thousands of large genotype chips (e.g. Affymetrix Genome-Wide Human SNP Array 6.0 and Illumina Human1m-duo) and in HapMap III project on an ordinary desktop computer. Availability: http...