run("Close") //for loop through all roi for(m=0;m<roiManager("count");m++){ //loop through all the roi selectImage(a); roiManager("Select",m)' //duplicate roi for saving run("Duplicate...", "duplicate title="+m); //run("Clear Outside", "stack"); run("8-bit"); saveA...
but this has a consideration that the sequence of both ROI groups might be not same. So I tried to enlarge the ROI from DAPI image, but then I am having trouble in loop analysis. The macro runs for ever, but seems like to be saving same file names again and again, even with skippin...
functionfill_ROI(value,label,color){//Get the ROI by its gray valuefor(i=1;i<nSlices+1;i++){//Loop to traverse all slicesselectWindow(image_roi);setSlice(i);//setThreshold(value,value);//Threshold to select certain pixel valuerun("Create Selection");if(selectionType()==-1){//If...
This chapter introduces GPU-accelerated image processing in ImageJ/Fiji. The reader is expected to have some pre-existing knowledge of ImageJ Macro programming. Core concepts such as variables,for-loops, and functions are essential. The chapter provides basic guidelines for improved performance in ty...
* Macro to open all images in a folder, append to a stack and set thresholds for each channel */ function processFolder(input) { // Setup close("*"); open(input + "/BackgroundLevels.csv"); list = getFileList(input); // Process Files by subtracting background ...
But before making the batch processing workflow, we need to define the main part of the processing, the steps which are to be done for each single image. The ImageJ macro file, which you can find in the code repository,Footnote 2 is a simple workflow that runs on an open, active ...
可以通过Macro Recorder来查看一个插件必要的参数。 打开Plugins-Macros-Record 运行命令,比如上面的Process-Filters-Median。此时会出现一个对话框,要求输入半径,点击OK 查看Recorder窗口中的显示:run(“Median…”, “radius=2”); 这说明中值滤波的一个必要参数就是radius。 运行命令command 上面的插件plugin其实可以...
问设置ImageJ宏批次处理实验室图像EN目前，我正在使用ImageJ/斐济对大量的实验室图像进行分批处理，但我...
问ImageJ:多幅图像直方图的导出列表EN 现需要对多幅栅格数据文件进行直方图绘制，具体绘制内容即各...
Improved grammar for nested functions in loop and if statements Added more code completion templates Added a new action to insert text of the macro recorder (CTRL+SHIFT+R or CMD+SHIFT+R)New in 1.51p (new macro editor available!):In this relase a macro editor and ImageJ perspective have ...