其中,insert size、pair orientation和insert size and pair orientation是查看突变时最常用的三个模式。 1 insert size reads根据插入片段长度着色,可用于推断结构突变(SV)——插入、缺失和染色体间重排。 灰色表示insert size正常,是常规reads。 红色表示insert size大于预期,表示可能存在缺失突变。 蓝色表示insert size...
在read track中右键选择"Color alignments by"→"insert size and pair orientation",将reads更改为按照插入片段大小和reads对的方向进行着色。 由于融合基因中ROS1在6号染色体上,和SLC34A2不是同一个染色体,因此可以在read track中右键选择"Sort alignments by"→"chromosome of mate",按照成对的另一条read所在的...
在read track中右键选择"Color alignments by"→"insert size and pair orientation",将reads更改为按照插入片段大小和reads对的方向进行着色。 由于融合基因中ROS1在6号染色体上,和SLC34A2不是同一个染色体,因此可以在read track中右键选择"Sort alignments by"→"chromosome of mate",按照成对的另一条read所在的...
青色、深蓝色:倒置、重复、易位事件),更多详情见:Interpreting Color by Insert Size 和 Interpreting Color by Pair Orientation;低分辨率下在 Track Alignments 区域选择Color alignments by >> insert size and pair orientation时比对的reads会显示不同的颜色 (Red have larger than expected inferred sizes,...
低分辨率下在 Track Alignments 区域选择Color alignments by >> insert size and pair orientation时比对的reads会显示不同的颜色 (Red have larger than expected inferred sizes, and therefore indicate possible deletions; Blue have smaller than expected inferred sizes, and therefore indicate insertions;实心灰...
低分辨率下在 Track Alignments 区域选择Color alignments by >> insert size and pair orientation时比对的reads会显示不同的颜色 (Red have larger than expected inferred sizes, and therefore indicate possible deletions; Blue have smaller than expected inferred sizes, and therefore indicate insertions;实心灰...
2.2 Interpreting Color by Pair Orientation 成对reads的方向可用于检测结构变异事件,包括染色体倒置,复制和易位。 绿色、蓝绿色和深蓝色的阴影表示倒置、复制和易位的结构事件;不同的颜色取决于不同的平台。 image.png Inversions 染色体上的倒置。 image.png ...
低分辨率下在 Track Alignments 区域选择Color alignments by >> insert size and pair orientation时比对的reads会显示不同的颜色 (Red have larger than expected inferred sizes, and therefore indicate possible deletions; Blue have smaller than expected inferred sizes, and therefore indicate insertions;实心灰...
低分辨率下在 Track Alignments 区域选择Color alignments by >> insert size and pair orientation时比对的reads会显示不同的颜色 (Red have larger than expected inferred sizes, and therefore indicate possible deletions; Blue have smaller than expected inferred sizes, and therefore indicate insertions;实心灰...