Data were obtained from Human Protein Atlas Dataset available from proteinatlas.org. 不仅可以直接使用,而且可以独立撑起一个figure。这数据库,我王多余学了。 THE HUMAN PROTEIN ATLAS,简称HPA,分为Cell,Tissue和Pathology三个版块,分别展示了蛋白在细胞、正常组织和癌变组织中的表达情况。 我以ITGB6为例,实操...
HPA(Human Protein Atlas)数据库介绍生信交流平台 立即播放 打开App,流畅又高清100+个相关视频 更多 1092 0 01:00 App HPA连续供气系统 搭配 m4转接 测试使用效果 5551 1 05:20 App WGCNA共表达网络—核心基因筛选 966 0 26:10 App miRNA-circRNA-mRNA构成的ceRNA网络思路分享(一) 1.7万 0 26:10 App 单...
The Human Protein Atlas (HPA) Subcellular Section has generated the first subcellular proteome map of human cells, consisting of a publicly available dataset of 83,762 confocal microscopy images detailing the subcellular localization of 13,041 proteins (HPAv21)6 across a multitude of cell lines. Cl...
4zxxix,zxxx and Supplementary Table 17), and we validated these human-specific markers referring to the Human Protein Atlas (HPA)35,81,82,83 (Supplementary Fig. 8). In the brain NVU, mapping of our dataset to the freshly isolated mouse dataset70 revealed high transcriptomic similarity ...
BackgroundThe Human Protein Atlas (HPA) aims to map human proteins via multiple technologies including imaging, proteomics and transcriptomics. Access of the HPA data is mainly via web-based interface allowing views of individual proteins, which may not be optimal for data analysis of a gene set...
Fig. 1: Overview of image dataset and challenge design. a, A typical HPA Cell Atlas image and the aim of the competition. Each image consists of four channels: the antibody-stained protein of interest (green) and three reference channels to outline the cell: microtubules (red), nucleus (bl...
The Human Protein Atlas (HPA) aims to map human proteins via multiple technologies including imaging, proteomics and transcriptomics. Access of the HPA data is mainly via web-based interface allowing views of individual proteins, which may not be optimal for data analysis of a gene set, or auto...
HPA: The human protein atlas public database TSV: Tab-separated values nTPM: Normalized transcripts per million PERMANOVA: Permutational multivariate analysis of variance DNASE1L3: Deoxyribonuclease 1 like 3, nuclease DNASE1: Deoxyribonuclease 1, nuclease DFFB: DNA fragmentation factor subunit ...
a, Expression of CSTE (antibody: CAB032687, n = 3 biologically independent samples for each region) in gut histological sections from proteinatlas.org. Scale bar = 50 µm. b, UMAP visualization of BEST4 enterocytes in scRNA-seq dataset coloured by key marker BEST4/OTOP2 expression and ...
(GTEx) project69with normalized RNA-seq data in 48 normal human body tissues, the Human Protein Atlas (HPA)70with protein immunohistochemistry microarray data in 44 normal human body tissues, and the Fantom5 project71with CAGE (Cap Analysis of Gene Expression) peaks (tags per million) for ...