001、问题 htsjdk.samtools.SAMFormatException: SAM validation error: ERROR::READ_GROUP_NOT_FOUND:Record 124082463, Read name SRR11176426.101884444, RG ID on SAM 002、解决方法 。
官网API地址:https://samtools.github.io/htsjdk/javadoc/htsjdk/index.html 官方API文档 大概看了下文档之后,发现SAMReader可能是使用了我还是比较陌生的工厂模式,需要从一个SAMReaderFactory来获取 publicabstractclassSamReaderFactory extends java.lang.Object Describes the functionalityforproducing SamReader,andoffers ...
API documentation for all versions of HTSJDK since1.128are available throughjavadoc.io. If you believe you have found a bug or have an issue with the library please: Search the open and recently closed issues to ensure it has not already been reported; ...
Exception in thread "main" htsjdk.samtools.SAMException: Value was put into PairInfoMap more than once解决: 比对完毕的bam文件中存在 unpaired reads,需要对这一步进行过滤后重新标记,bwa比对完毕以后通过samtools进行过滤,代码如下: 代码:samtools view -f 0x2 -b in.bam > out.bam...
CombineGVCFs报错：htsjdk.samtools.SAMFormatException: Did not inflate expected amount老师们好，我最近...
HomePage https://samtools.github.io/htsjdk/ Ranking #3940 in MvnRepository (See Top Artifacts) Used By 125 artifacts Central (83) VersionScalaVulnerabilitiesRepositoryUsagesDate 4.1.x 4.1.3 Central 3 Oct 07, 2024 4.1.2 Central 1 Sep 18, 2024 4.1.1 Central 3 Jun 12, 2024 4.1.0 Central...
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合同违约是指合同一方或双方违反合同中约定的义务、法律直接规定的义务和法律原则和精神所要求的义务。当事人一方不履行合同义务或者履行合同义务不符合约定,给对方造成损失的,损失赔偿额应当相当于因违约所造成的损失,包括合同履行后可以获得的利益,但不得超过违反合同一方订立合同时预见到或者应当预见到的因违反合同可能...
API documentation for all versions of HTSJDK since 1.128 are available through javadoc.io.If you believe you have found a bug or have an issue with the library please:Search the open and recently closed issues to ensure it has not already been reported; Then log an issue....