A Java API for high-throughput sequencing data (HTS) formats. HTSJDK is an implementation of a unified Java library for accessing common file formats, such asSAMandVCF, used for high-throughput sequencing data. There are also a number of useful utilities for manipulating HTS data. ...
What's Changed reducing memory required in IntervalMergerIterator when not concatting names by@meganshand#1711 Implements collections of bundles. by@cmnbroadin#1702 in#1715 Full Changelog:4.1.1...4.1.2
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HomePage https://samtools.github.io/htsjdk/ Ranking #3940 in MvnRepository (See Top Artifacts) Used By 125 artifacts Central (83) VersionScalaVulnerabilitiesRepositoryUsagesDate 4.1.x 4.1.3 Central 3 Oct 07, 2024 4.1.2 Central 1 Sep 18, 2024 4.1.1 Central 3 Jun 12, 2024 4.1.0 Central...
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Contributor tomwhitecommentedFeb 13, 2019 cmnbroadadded thecramlabelFeb 13, 2019 cmnbroadassignedjmthibault79Feb 14, 2019 jmthibault79mentioned this issueFeb 14, 2019 Sign up for freeto join this conversation on GitHub. Already have an account?Sign in to comment ...
官网API地址:https://samtools.github.io/htsjdk/javadoc/htsjdk/index.html 官方API文档 大概看了下文档之后,发现SAMReader可能是使用了我还是比较陌生的工厂模式,需要从一个SAMReaderFactory来获取 publicabstractclassSamReaderFactory extends java.lang.Object ...
代码来源:com.github.samtools/htsjdk BAMRecord.getBinaryAttributes() @OverrideprotectedSAMBinaryTagAndValuegetBinaryAttributes(){if(!mAttributesDecoded){decodeAttributes();}returnsuper.getBinaryAttributes();} 代码来源:samtools/htsjdk
add(altAllele); } } // TODO: Must break the loop now to prevent multiple entries messing up the number of fields in the funcotation (issue #4930 - https://github.com/broadinstitute/gatk/issues/4930) break; } } } // If we didn't add funcotations for an allele, we sh...
Update github actions to use upload_artifact@4 (#1734) Dec 18, 2024 gradle Update to gradle 8.5 (#1697) Dec 19, 2023 scripts Implementation of CRAM 3.1 codecs, upgrade to samtools 1.21, use upda… Feb 12, 2025 src Set mapq on supplemental alignments in SamPairUtil (#1737) Feb 21, 20...