You are learning how to make a bow tie, and you can choose if you want a single bow tie or double bow tie. These two use the same method but the big one doubles up. Make ’em any size you want, I like them a little big to give the boy a funky look. 1. For each bow tie ...
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>>> - Finally when I install bowtie2 this way it creates 2 >>> bowtie2_indices.loc files, one in galaxy/tool-data and the other in >>> shed_tools/toolshed.g2.gx.psu.edu/dev/bowtie2, which one do I need to >>> edit to point to my index files? No matter which one I ch...
Perfect! Now, you’re ready to make your bow tie! Step 6: Again, go back to your ⅓ yard of fabric that is folded in half, the long way. Measure approximately 4” wide segments and cut out 2 of them (keeping the fold intact). Step 7: Put one, 4” segment aside (this will ...
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Instructions on how to tie a tie. Learn how to tie necktie knots like the Four-In-Hand, Half-Windsor, Windsor and Pratt. Instructions on tying a bow tie are also covered.
In this case, visit https://anaconda.org/bioconda/bowtie2 which instructs to use the command conda install bioconda::bowtie2. This will take care of all dependencies including the python version. Python 3.5 is very old, it is not surprising this chokes up here. Indeed creating a separate...
Currently both the fastqc rule and the bowtie2 rule create one output file generated using two inputsSRRXXXXXXX_1.fastq.gzandSRRXXXXXXX_2.fastq.gz. I need the fastq rule to generate two files, a separate one for each of thefastq.gzfiles but I'm unsure how to index the config file cor...
# Bowtie2 location export PATH=/Users/lahmersk/bowtie2-2.3.4.1:$PATH # Pilon location export PATH=/Users/lahmersk/pilon-1.21:$PATH # Prokka location export PATH=/Users/lahmersk/prokka/bin:$PATH # Barrnap location export PATH=/Users/lahmersk/barrnap/bin:$PATH ...
However, inputs for Bowtie2, the FASTQC rules and input and output of thetrim_galore_perules need to contain the SRA numbers. The problem starts at the output oftrim_galoreand influences all downstream rules. Although I have extracted SRA numbers in previous rules, I'm not sure how ...