et al. Recent improvements to the SMART domain–based sequence annotation resource. Nucleic Acids Res. 30, 242–244 (2002). Article CAS Google Scholar Altschul, S.F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389–34...
It is important to compare the context sequence of the SNP assay to the SNP sequence in the NCBI’s dbSNP database to determine which dye is associated with the minor allele. Discrimination of a single base Three factors contribute to discrimination bas...
How to open an FNA fileYou need a suitable software like NCBI BLAST to open an FNA file. Without proper software you will receive a Windows message "How do you want to open this file?" or "Windows cannot open this file" or a similar Mac/iPhone/Android alert. If you cannot open your...
These sequence data have been submitted to the NCBI repository Sequence Read Archive (SRA) databases under accession numbers SAMN16442373 to SAMN16442378; SAMN16442391 to SAMN16442396; SAMN16442397 to SAMN16442402; SAMN16442409 to SAMN16442414; SAMN16442427 to SAMN16442432; SAMN16442444 to SAMN1...
lutea METH on NCBI database, allowing to retrieve METH from Chrysochromulina sp. CCMP 291, Thalassiosira pseudonana CCMP 1335 and Phaeodactylum tricornutum CCAP 1055/1. The iMicrobe database was then que- ried, yielding sixteen haptophyte transcriptomes samples corresponding to 9 haptophyte families ...
and bioinformatics research in the development and identification of novel drugs, with a special focus on human mycoses. In addition to this, the framework of bioinformatics findings, advantages, and limitations of fungal drug discovery was obtained by data integration from pharmacology and other associ...
Also, the GO gene sets are extracted from MSigDB version 6.1 [10] and used as the gene set database for all experiments. Hereafter, this database is referred to as G. After generating D1(2×n),…,Dm(2×n), each replicate dataset Di(2×n)(1≤i≤m) and the gene set database ...
README Introduction This R script is to demonstrate the steps to download GSE data from NCBI GEO database, and to obtain the differential expressed genes from GSE data. A little background of GEO The Gene Expression Omnibus (GEO) is a data repository hosted by the National Center for Biotech...
(PDB ID: 6FM1). However, it remained still largely unknown how the phage S-2L incorporates the base Z in its genome, especially as no gene corresponding to a DNA polymerase could be detected. This is in contrast with the situation in the phage φVC8, where a DNA polymerase of the ...
TheBLASTdatabases are required to run BLAST locally and to supportautomatic resolution of sequence identifiers. Documentation about these can be foundftp://ftp.ncbi.nlm.nih.gov/blast/db/README. These databases may be retrieved automatically with the update_blastdb.pl perl script, which is included...