Now we want to know the gene name associated with the gene ID. The annotation data can be retrieved with the ‘fData’ function. Let’s select the ID, GB_ACC, this is genbank accession ID. Add into fit2 table. The “Volcano Plot” function is a common way of visualising the results...
I want to import gene fasta file from NCBI database using the Accession Number. I use the code Data = getgenbank('NP_752927.1'); but, getting this error : Error using getncbidata (line 191) The key NP_752927.1 was not found in the nucleotide database at this time. Pleas...
Unfortunately, there appears to be little, if any, herd immunity against the virus in the populations of these countries, despite the closely related Dengue virus being prevalent. Table 2 Non-synonymous amino acid changes found in sequences from the present Zika virus epidemic GenBank accession ...
64]. Positions refer to the alignments in Additional files1and2, and to the reference sequences ofP. milaschewitchii, ZSM Mol 20080054 (GenBank HQ168435 and JF828043) from
[63,64]. Positions refer to the alignments in Additional files1and2, and to the reference sequences ofP. milaschewitchii, ZSM Mol 20080054 (GenBank HQ168435 and JF828043) from Croatia, Mediterranean Sea (confirmed to be conspecific with material collected at the type locality in molecular ...
blastn-short BLASTN program optimized for sequences shorter than 50 bases megablast Traditional megablast used to find very similar (e.g., intraspecies or closely related species) sequences dc-megablast Discontiguous megablast used to find more distant (e.g., interspecies) sequences4.5...
variabilis Haller’s organ spf lipocalin (contig 84287) determined the top GenBank hit (lowest e-value) to be an A. triste lipocalin (JAC30054.1). An alignment between the Haller’s organ spf lipocalin (contig 84287) and the A. triste lipocalin (JAC30054.1) showed a significant number of ...
However, this number may be even higher because many isolates were assigned up to the genus level. Table 2. Sequence identity (%) of endophytic leaf fungi from Cerrado woody species compared with other sequences from the GenBank using BLAST analysis. Isolates with an identity percentage below ...
[9]. Moreover, we did not manage to find studies comparing soil bacterial diversity in cropped fields under different tillage regimes with soil bacterial diversity in the adjacent undisturbed ecosystem to grasp the magnitude of changes between them. Besides, studies of bacteriobiome diversity in ...
New technological advancements often radically change our views on the world. Sequencing of DNA and use of it to reconstruct the evolution of organisms was an advancement that revolutionised human understanding of the origin of nematodes and interrelationships within this often neglected but diverse and...