Using 1.2 million SNPs from 173 rice varieties to analyze relative spikelet fertility (RSF) at high temperature and room temperature, Hu et al. (2022) located a new locus, qRSF9.2, where only the gene LOC_Os09g38500 contained a nonsynonymous SNP significantly associated with RSF, and its ...
many analysis platforms cannot accurately interrogate the region due to the technical challenges of assessing GC-rich DNA content. Therefore, it is important that fragile X carrier screening is being performed with robust technology that can analyze extreme ...
useful for further analyses and necessary for creating input files for tools like PLINK and REGENIE. Further information can be found in Research Analysis Platform documentation:https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/using-spark-to-analyze-tabular-data ...
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These Genome-Wide Association Studies, or GWAS, analyze the entire genome of a large number of individuals to identify genetic variants associated with a clinical outcome, such as the ability to naturally control viral replication. Measuring HIV replication control: not enough in African populations ...
Welcome! This repository is a collection of R scripts used to analyze array-based CNV. The primary aim is to get you familiar with looking at CNV descriptive statistics for potential issues, and running CNV burden and individual locus association. I've added a small example dataset that mimics...
With the intensification of the greenhouse effect, a series of natural phenomena, such as global warming, are gradually recognized; when the ambient temperature increases to the extent that it causes heat stress in plants, agricultural production will in
At first, these newer, larger studies seemed to be meeting with some success. With massive amounts of data at one’s fingertips, a strong belief in one’s cause and the ability to analyze data in any number of ways, one is able to make some statistical correlations...
Of the 133 studies (from 103 articles) included in the narrative synthesis, 58 studies (from 46 articles) with 268 datasets, after aggregation, were included in our quantitative synthesis database (Additional file11). Of these, 22 studies (91 datasets after aggregation) were used to analyze Co...
Altering the natural flow regime, an essential component of healthy fluvial systems, through hydropower operations has the potential to negatively impact freshwater fish populations. Establishing improved management of flow regimes requires better unders