devtools::install_github('smorabit/hdWGCNA',ref='dev') Troubleshooting the installation If you have trouble installing some of the dependencies, we advise trying to install them using alternative sources. For example, if you try to install the package using Bioconductor or CRAN, try instead with...
Files dev .github R data test_seurat.rda docs inst man pkgdown reference tests vignettes .DS_Store DESCRIPTION LICENSE LICENSE.md NAMESPACE NEWS.md README.md _pkgdown.ymlBreadcrumbs hdWGCNA /data / test_seurat.rda Latest commit smorabit...
hdWGCNA 单细胞数据 • hdWGCNA (smorabit.github.io) 全程用R语言完成,第一步,创建一个文件夹hdwgcna准备运行,下载数据 download.file(url='https://swaruplab.bio.uci.edu/public_data/Zhou_2020.rds', destfile='C:/Users/Administrator/Desktop/hdwgcna/Zhou_2020.rds') 加载数据集和所需库 # single...
hdWGCNA (high dimensional WGCNA,高纬度WGCNA),用于单细胞RNA-seq或空间转录组学等高维转录组学数据中执行加权基因共表达网络分析。 详情查看:https://smorabit.github.io/hdWGCNA/articles/basic_tutorial.html hdWGCNA包 https://github.com/smorabit/hdWGCNA 下载所需数据 # wget https://swaruplab.bio.uci...
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packages(c("Seurat", "WGCNA", "igraph", "devtools")) devtools::install_github('smorabit/hdWGCNA', ref='dev') 单细胞示例 代码语言:javascript 代码运行次数:0 运行 AI代码解释 # single-cell analysis package library(Seurat) # plotting and data science packages library(tidyverse) library(cowplot...
devtools::install_github('smorabit/hdWGCNA', ref='dev') 单细胞示例 # single-cell analysis package library(Seurat) # plotting and data science packages library(tidyverse) library(cowplot) library(patchwork) # co-expression network analysis packages: ...
2、hdWGCNA:https://smorabit.github.io/hdWGCNA/ 3、hdWGCNA的Network可视化流程:https://smorabit.github.io/hdWGCNA/articles/network_visualizations.html 4、hdWGCNA的其他可视化流程:https://smorabit.github.io/hdWGCNA/articles/hdWGCNA.html
//smorabit.github.io/hdWGCNA/reference/ModuleTFNetwork.html diff --git a/inst/pkgdown.yml b/inst/pkgdown.yml index b04c479a..9287d789 100644 --- a/inst/pkgdown.yml +++ b/inst/pkgdown.yml @@ -21,7 +21,7 @@ articles: pseudotime: pseudotime.html sctransform: sctransform.html tf_...
devtools::install_github('smorabit/hdWGCNA', ref='dev') install.packages("WGCNA") BiocManager::install("impute") 数据读取 首先,加载所需要软件包,如下: # single-cell analysis package library(Seurat) # package to install the mouse brain dataset library(SeuratData) # plotting and data science...