RAINBOWR 不仅可以做基于 SNPs 集的GWAS(SNP-set GWAS),也可以做单个 SNP 的 GWAS(Single-SNP GWAS)、分析上位效应(SNP-set x SNP-set interaction)、绘制曼哈顿图和 QQ Plot,功能非常多。 RAINBOWR 稳定版可直接通过 CRAN 安装,最新版则需要通过GitHub(https://github.com/KosukeHamazaki/RAINBOWR): 代码语...
RAINBOWR 不仅可以做基于 SNPs 集的GWAS(SNP-set GWAS),也可以做单个 SNP 的 GWAS(Single-SNP GWAS)、分析上位效应(SNP-set x SNP-set interaction)、绘制曼哈顿图和 QQ Plot,功能非常多。 RAINBOWR 稳定版可直接通过 CRAN 安装,最新版则需要通过 GitHub(https://github.com/KosukeHamazaki/RAINBOWR): ###...
plot.qq = TRUE plot.Manhattan = TRUE ZETA = ZETA, n.PC = 4, P3D = TRUE, count = FALSE) 进行SNP-Set GWAS,以前 4 个 主成分和亲缘关系 ZETA 进行校正,并绘制曼哈顿图和 QQ 图: SNP_set.res <- RGWAS.multisnp(pheno = pheno.GWAS, geno = geno.GWAS, ZETA = ZETA, plot.qq = TRUE,...
Results of a haplotype-based GWAS for recurrent laryngeal neuropathy in the horse. Marie-Capucine Dupuis,Zhiyan Zhang,Tom Druet,Jean-Marie Denoix,Carole Charlier,Pierre Lekeux,Michel Georges. Mammalian Genome . 2011Dupuis M C, Zhang Z, Druet T, Denoix J M, Charlier C, Lekeux P, Georges ...
Pre-harvest sprouting (PHS) poses a significant global challenge to cereal production, impacting both yield and quality. In this study, we employed genome-wide association studies (GWAS) on diverse rice accessions to identify novel PHS-associated haplotypes. An assessment of 127 cultivated accessions...
Both common and rare genetic variants have been shown to contribute to the etiology of complex diseases. Recent genome-wide association studies (GWAS) have successfully investigated how common variants contribute to the genetic factors associated with co
In this study, we employed genome-wide association studies (GWAS) on diverse rice accessions to identify novel PHS-associated haplotypes. An assessment of ... MH Min,AA Khaing,SH Chu,... - 《Journal of Integrative Agriculture》 被引量: 0发表: 2024年 Combining a Genome-Wide Association Study...
[4] combined with the option of "-FixBlock". 5 can be used as input if users prefer to not show the block region. -InGWAS The statistics file (e.g., association statistics, but other values such as Tajima's D can also be accepted) for generate plot together with the LD plot. ...
-Cutline The significance cutline of the -InGWAS file. -TopSite Users can use this option to assign one interested SNP in the GWAS plot (Default is the most significant SNP, can be changed with chr:pos). -PointSize Users can use this option (any number over 0) to set the point size...
These haplotype alleles may serve as genomic resources in breeding programs aimed at improving the yield potential of soybean. Keywords: GWAS; haplotype analysis; SNP; soybean; yield-related traits 1. Introduction Yield characters are complex quantitative traits that posed some difficulties to breeding ...