Additionally, network-assisted gene prioritization (NAGP) was applied in order to better understand the genetic basis of flowering-related traits in tropical maize. According to the results, the linkage disequilibrium (LD) decayed rapidly within 3 kb, with a cut-off value of r2 = 0.11. Total ...
haplotypes and their use in breeding operations. The haplotype-based breeding (HBB) technique utilizes genome sequence data to identify specific allelic variations that accelerate the breeding cycle and overcome linkage drag difficulties. This study aims to present the idea of HBB, examine the connectio...
For millions of people in the tropics, cassava is the third most consumed carbohydrate source, after rice and maize1. Even though cassava was domesticated in Latin America2,3, it has spread widely and has become a major staple crop in Africa. Although its wild progenitor, M. esculenta sp....
aPhysical positions of productivity-related QTL (rectangles) and GWAS hits (triangles) mapped to the highly conserved region on chromosome 6A (see “Methods”). *; grain-size mapping interval based on UK cultivars Spark and Rialto.bDiagrammatic representation of all haplotype blocks on chromosome 6...
in the form of protein sequence with mutational position and two amino acid variants. Sequence-based characterization of the substitution site, profile analysis of homologous sequences and mapping of the substitution site to a known protein three-dimensional structure are the parameters taken into ...
(c) Genetic linkage map of QYrSM155.2 on wheat chromosome 7A based on genotype data from RILs. The red bar indicates the candidate intervalfor QYrSM155.2. (d) Stripe rust responses GWAS in panel 1. The horizontal line shows the genome-wide significance threshold − log10(P) value of ...
nucleotide diversity was estimated based on all the 388HvC3H-related SNPs.BMedian-Joining network analysis of three representativeHvC3Hs in wild and domesticated barley populations. The circle size represents the number of accessions holding a particular haplotype. Circle colors refers to different ...
Previously, we designed a genome-wide association study (GWAS)-based strategy to uncover candidate NUE genes followed by functional validation through genetic complementation tests14,17. Using PTNR and PHR as the proxies of NUE on a core collection of rice germplasm consisting of 117 varieties14, ...
Single SNP-based and haplotype-based GWAS on yield-related traits The markers with the minor allele frequencies less than 0.05 were treated as rare alleles and filtered out. The compressed mixed linear model (MLM)44,53including Q + K in the model implemented in the TASSEL v3.0 software ...
plants Article Haplotype- and SNP-Based GWAS for Growth and Wood Quality Traits in Eucalyptus cladocalyx Trees under Arid Conditions Camilo E. Valenzuela 1, Paulina Ballesta 2, Sunny Ahmar 3, Sajid Fiaz 4, Parviz Heidari 5 , Carlos Maldonado 6 and Freddy Mora-Poblete 1,* 1 Institute of ...