附赠gtf2bed12.sh代码,输入你要转换的gtf文件名即可比如 ./gtf2bed12.sh xxx.gtf #!/bin/bash#set -xset-e#set -u usage(){cat<<EOF >&2${txtcyn}Usage:$0 options${txtrst}${bldblu}Function${txtrst}:This script is used to transfer GTF to bed12 format.${txtbld}...
bed文件定义中有12列，其中前三列是必须的。bed12表示包含12列的bed文件，包含的信息最完整。bed文件官方网页: https://m.ensembl.org/info/website/upload/bed.html 前三列：这个例子也只给了前9列的信息 先使用convert2bed把gtf转化为bed6文件。再使用别人开发的工具把bed6文件转化为bed12文件。
gfftobed 转换GFF3 / GTF到BED 该程序采用GFF3或GTF(基于1)格式的输入基因组注释,并将特定特征转换为6列BED格式(基于0),同时保留注释文件属性列的任何所需字段。 当需要围绕特定特征和唯一ID的基因组间隔时,此功能很有用。 它还可以在每个功能周围添加一个窗口。 处
fastest GTF/GFF-to-BED converter chilling around converterhigh-performancegene-annotationgtfbedgff UpdatedJan 18, 2025 Rust process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED tsvbioinformaticsgff3samfastagtffastqseqkit UpdatedFeb 13, 2025 ...
x86_64/gtfToGenePred wget -c http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToBed chmod u+x gtfToGenePred genePredToBed gtfToGenePred genes.gtf genes.genePred genePredToBed genes.genePred genes.bed 最后编辑于 :2024.10.19 10:39:26 ©著作权归作者所有,转载或内容合作请联系...
本来我是想使用bedtools 把bed12文件提取出fasta文件,得到read的序列信息 所以才这么折腾 后面查了一下,可以直接使用cufflink中的gffread把gtf文件提取出对应的fasta文件 参考链接: https://www.jianshu.com/p/566954bd5711 或者使用Tophat中的gtf_to_fasta ...
3. 2 axles faltbed trailer, 3 axles faltbed trailer ,4 axles flatbed traiers meet differtent standard of different country. The cargo's carrying part is container structure designed, mainly applicable to the transportations for ships, ports, airlines, roads, ...
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The lathe bed tilts by 45°and the inclined placement of lathe carriage. 3.Taiwan's high-precision spindle, comprising Japan NSK precise bearings; three-jaw hydraulic chuck or other elastic clamp can be directly fitted on the main shaft flange. 4.The drive part of mac...
Pyrolytic graphite produced by non-fluidized bed is mainly applied to rocket nozzle throat lining, satellite attitude control diamagnetic ball, electron tube grid, smelting high-purity metal crucibles, electric brush for voltage regulator, discharge cavity of laser, high temperature Furnace insul...