Genome-wide analysis of gene expression is the study of transcription at a genomic scale, also known as transcriptomics. Typically relying on data from microarrays or high throughput sequencing, it can determine what genes or transcript isoforms are enriched in a particular cell or tissue type, con...
, and the phylogenic analysis, struc‑ tures, chromosomal location, gene expression patterns and subcellular localizations were also carried out to under‑ stand the evolution and function of CaBBX genes. All these CaBBXs were divided into five classes, and 20 of ...
We created an in-house script for calculating the LRI to the 4th decimal point. The genome-wide expression dataset with genes in rows and samples in columns was provided as the input matrix. With a large meta-dataset as input and the downstream analysis of the results, the script was execu...
To identify the genes involved in the development of low temperature (LT) tolerance in hexaploid wheat, we examined the global changes in expression in response to cold of the 55,052 potentially unique genes represented in the Affymetrix Wheat Genome microarray. We compared the expression of genes...
In order to investigate the role(s) of these CDCPs, we have carried out their detailed analysis in whole genomes of itArabidopsis /itand itOryza/it, including their classification, nomenclature, sequence analysis, domain analysis, chromosomal locations, phylogenetic relationships and their expression ...
Knowing the expression patterns of lineage-specific genes at different developmental stages and in different tissues or organs is essential to illuminate whether the lineage-specific genes have corresponding biological function. Therefore, we exploited the RNA-seq data to assess a far more precise measur...
Gene expression data were analyzed from three chickpea datasets to identify genes associated with salt stress. A total of 97 differentially expressed genes (DEGs) were identified (FDR < 0.05), including key genes involved in abscisic acid signaling, the dehydration response and cell wall ...
arboreum, with their chromosomal distribution, syntenic analysis, gene structure and conserved motifs analysis, as well as Ka/Ks values and expression pattern. In addition, predicted regulatory mechanism showed 111 HMAD genes were possibly regulated by salt-stress. This study will provide the basic ...
We performed differential expression analysis and gene set testing on the expression data and defined the top 100 significantly enriched gene sets from the RNA-Seq analysis as the “truth” (Additional file 1: Fig. S4A-D). For GO categories, GOmeth consistently performed the best with the ...
Expression of the epithelial cell adhesion molecule EpCAM is upregulated in a variety of carcinomas. This antigen is therefore explored in tumour diagnosis, and clinical trials have been initiated to examine EpCAM-based therapies. Notably, the possible i