Understanding and exploiting genetic diversity is a key factor for the productive and stable production of rice. Here, we utilize 73 high-quality genomes that encompass the subpopulation structure of Asian rice (Oryza sativa), plus the genomes of two wild relatives (O. rufipogonandO. punctata), ...
calculated genetic diversity (Supplementary Fig.10), which suggested that the genetic diversity could have also contributed to the percentage of core genes. Meanwhile, the core genes also tended to be more conserved among 27 other plant genomes (Fig.6band Supplementary Data17), suggesting their rol...
Germline WGS data provides clarification of genetic ancestral contributions [6], with ancestry informativeness assigned based on 7,472,833 biallelic SNVs across the genome using the population analysis tool fastSTRUCTURE v1.0 [13]. Consequently, 115 patients (63.9%) are African ancestral (114 South...
A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380, 152–154 (1996). Article ADS CAS PubMed Google Scholar Broman, K. W., Murray, J. C., Sheffield, V. C., White, R. L. & Weber, J. L. Comprehensive human genetic maps: individual and sex...
These data provide a great opportunity to understand more complex genetic diversity of human genomes and gain insight on population-specific variations, which are important for clinical or public health [19]. We have shown a strategy based on high-depth sequencing, de novo assembly, gene ...
Clary DO, Wolstenholme DR: The mitochondrial DNA molecular of Drosophila yakuba : nucleotide sequence, gene organization, and genetic code. J Mol Evol. 1985, 22: 252-71. 10.1007/BF02099755. Article PubMed CAS Google Scholar Wolstenholme DR: Genetic novelties in mitochondrial genomes of multicellul...
The source code for ROP v1.0.4 is also available as Supplemental Material. Custom scripts necessary to reproduce the results and reference files are distributed with Supplemental Material and are available with the ROP software. A tutorial with detailed instructions on how to run ROP is freely ...
Querying the GI space of the human genome has been limited by current technology; to survey even every possible pairwise interaction, let alone higher-order interactions, would involve ~200 million unique genetic perturbations. Moreover, the GI landscape among randomly selected genes is exceedingly ...
A file format used for storing contact information or other metadata about individuals, often used in bioinformatics for genetic data. it typically contains information about genomic variations, such as single nucleotide polymorphisms (SNPs) or insertions/deletions (indels) .maf:: Mutation Annotation ...
Fig. 3: Genetic architecture of metabolite-WGAS associations. ANumber of metabolites associated with each locus;BAbsolute distance from mQTL position to transcription start site;CMinor allele frequency and effect size;DFrequency of mQTL sentinel allele in non-Finnish European Individuals vs African ind...