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We employed the GWAS-by-subtraction approach using genomic structural equation modelling29to identify this residual genetic signal (referred to as ‘NonEA-Income’). We identified one locus of genome-wide significance for NonEA-Income, marked by the lead SNPrs34177108on chromosome 16 (Extended Data...
One of the very early studies based on the Y-chromosome and a few autosomal markers, which included almost all the main SEB groups and covered most of the provinces from South Africa, indicated the possibility of genetic structure within the SEB populations29. However, many subsequent studies ...
[20]. The 4.23 Gb of theR. chensinensisreference genome was assembled into chromosome-level based on PacBio long reads and HiC data, yielding a contig N50 of 2.34 Mb and a scaffold N50 of 484.14 Mb. A total of 22,360 protein-coding genes were annotated based on the integration ofde ...
10.1038/ncomms10561 a 11 Cerebellum 10 9 8 DHX57 MLST8 PGP E4F1 ECI1 7 6 5 4 3 2 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 1819202122 Chromosome b Plotted SNPs 10 8 6 2p22.1 rs6723868 r2 100 0.8 0.6 800.4 0.2 60 4 40 2 20 0 HNRPLL GALM GEMIN6 SRSF7 MORN...
Finally, we calculated the predicted variant position with the following formula:Pospred=(∑k=1nrk2×posk)∑k=1nrk2where rk2 is the r2 value of LD between the SNPs, n is the number of SNPs, and posk is the position of the kth SNP on the chromosome. Identification of the putative ...
Here we perform a de novo chromosome-level genome assembly of the wild progenitor of castor bean. By resequencing and analyzing 505 worldwide accessions, we reveal that the accessions from East Africa are the extant wild progenitors of castor bean, and the domestication occurs ~ 3200 years ...
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CeCe Moore has also provided this link to Bill’s talk at the I4GG Conference in 2014, never before released except to paid subscribers, titled “Using Correlation Techniques on Y-Chromosome Haplotypes to Determine TMRCAs, Date STR Marker Strings, Surname Groups, Haplogroups and SNPs.” This ...