56. Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, et al. Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments. Genome Biol. 2008;9(1):R7. 57. Finn RD. Pfam: clans, web tools and services. Nucleic Acids Res...
47]. In males of other moth species, it has been observed that putative PRs may be the most highly expressed ORs in the antennae [48]. However, we observed that two receptors that cluster outside of the PR sub-family, SlitOR5 and SlitOR38, were among the most highly...
Additionally, the optimal substitution models for Maximum Likelihood (ML) tree inference were identified using ModelFinder [71]. For the sets of α- and β-tubulins JTT + F + I + G6 was determined as the optimal, and for γ-tubulins – JTT + I + G4 as the b...
which are involved in the response to dehydration and leaf senescence, respectively – traits that would intuitively require more elaborate regulation in a tree than in an annual plant, but surprisingly the RD21 family was one of the few gene families that was larger in Arabidopsis than in Popul...
Studer G, Rempfer C, Waterhouse AM, Gumienny R, Haas J, Schwede T. QMEANDisCo—distance constraints applied on model quality estimation. Bioinformatics. 2020;36(6):1765–71. https://doi.org/10.1093/bioinformatics/btz828. Article CAS PubMed Google Scholar Bertoni M, Kiefer F, Biasini M...
specific metabolites. The number of lost genes in different morphotypes is provided in the tree diagram.h, Syntenic gene families were separated into three groups corresponding to the numbers of homoeologs (single-, two- or three-copy) retained from theBrassicamesohexaploidization event. The ...
173 Haas CS, Creighton CJ, Pi X, Maine I, Koch AE, Haines GK et al. Identification of genes modulated in rheumatoid arthritis using complementary DNA microarray analysis of lymphoblastoid B cell lines from disease-discordant monozygotic twins. Arthritis Rheum 2006; 54: 2047–2060. 174 Lee HM,...
McDonagh A, Fedorova N, Crabtree J, Yu Y, Kim S, Chen D, Loss O, Cairns T, Goldman G, Armstrong-James D, Haynes K, Haas H, Schrettl M, May G, Nierman W, Bignell E: Sub-telomere directed gene expression during initiation of invasive aspergillosis. PLoS Pathog. 2008, 4 (9): ...
(Mya), andD. plexippus—M. cinxia, 69.4–111.5 Mya. The tree was visualized using FigTree (v1.4) (http://tree.bio.ed.ac.uk/software/figtree/). The gene count table from OrthoFinder (v2.5.4) was used as inputs to examine the expansion and contraction of each gene family in cafe...
Gene structure and protein domain organisation of StSET genes with respect to their phylogenetic order. A). The estimated phylogenetic tree for StSET genes, B). Gene structure of StSET genes, and C). Protein domain organisation of StSET proteins. We visualised the phylogenetic tree, the gene...