The GENCODE consortium is a sub group of the ENCODE consortium. Its aim is to provide complete annotation of genes in the human genome including protein-coding loci, non-coding loci and pseudogenes, based on experimental evidence. The final aim is for the HAVANA team to manually annotate the...
The GENCODE collaboration is part of the Encode project and responsible for the annotation and experimental validation of gene loci on the human genome. MATERIALS AND METHODS Bioinformatic bait design To generate the coordinates for the GENCODE exome, we extracted the coordinates for a total of ...
Here, we present and analyze the most complete human lncRNA annotation to date, produced by the GENCODE consortium within the framework of the ENCODE project and comprising 9277 manually annotated genes producing 14,880 transcripts. Our analyses indicate that lncRNAs are generated through pathways ...
The Human and Vertebrate Analysis and Annotation (HAVANA) group at the Wellcome Trust Sanger Institute produced the manually annotated geneset for the Encyclopedia of DNA Elements (ENCODE) pilot project and, as part of the Gencode subgroup, are reprising this role in the scale up to cover the...
The GENCODE project provides comprehensive annotation of the functional elements in human and mouse genomes with high accuracy. The annotations are released for the benefit of biomedical and genomic research domain. In this initiative, we have provided a basic user manual or roadmap to facilitate ...
We report the design of an extended set of targets for capturing the complete human exome, based on annotation from the GENCODE consortium. The extended set covers an additional 5594 genes and 10.3 Mb compared with the current CCDS-based sets. The additional regions include potential disease ...
GENCODE reference annotation for the human and mouse genomes.doi:10.1093/NAR/GKY955Oxford University Press
The first human genome has been sequenced at the turn of the year 2000. Since then, modern biology has made great progresses, also thanks to the introduction of Next-generation sequencing in the mid-2000s. The growing availability of gen... F Comolli - International Conference on Conceptual ...
Influence of mismatch values and read lengths on the mappability of the human projected transcriptome as defined by GENCODE [8].Thomas, DerrienJordi, EstelléSantiago, Marco SolaDavid, G. KnowlesEmanuele, RaineriRoderic, GuigóPaolo, Ribeca
A. J. Coffey et al., The GENCODE exome: sequencing the complete human exome. Eur. J. Hum. Genet. 19, 827 (2011). doi:10.1038/ejhg.2011.28 MedlineCoffey AJ, Kokocinski F, Calafato MS, Scott CE, Palta P, Drury E, et al. 2011. The GENCODE exome: sequencing the complete human...