python gbff2gff3.py 于是得到以下 替换方法： https://github.com/jorvis/biocode/blob/master/gff/convert_genbank_to_gff3.py 总结：转换后并不能得到直接可用的完整注释文件，建议直接搜索已有的注释文件
3.更新一个python脚本,同样也可以把genebank格式转换成gff格式。 先安装biopython;我采用的是mamba安装。 mamba install biopython 再安装bcbio-gff pip install bcbio-gff 转换代码 Converting other formats to GFF3;只需要在脚本里面改成你的文件就可以了。 fromBCBioimportGFFfromBioimportSeqIOin_file="your_file....
python3 gbff_gff3.py-h usage:---This is a little script to convert gbff to gff3.The input file must downloadfromNCBIwebsite.---ifyou have any question please contact me,email:albert_xin@qq.com[-h][-i][-oFILE_OUT]optional arguments:-h,--help showthishelp message and exit-i,--f...
Running setup.py install for bcbio-gff ... done Successfully installed bcbio-gff-0.6.6 转换代码 Converting other formats to GFF3 fromBCBioimportGFFfromBioimportSeqIOin_file="your_file.gb"out_file="your_file.gff"in_handle=open(in_file)out_handle=open(out_file,"w")GFF.write(SeqIO.parse(i...
python3 gbff_gff3.py-h usage:---This is a little script to convert gbff to gff3.The input file must downloadfromNCBIwebsite.---ifyou have any question please contact me,email:albert_xin@qq.com[-h][-i][-oFILE_OUT]optional arguments:-h,--help showthishelp message and exit-i,--f...