genomeGTFtools Overview These are some scripts to convert various features and annotations into a GFF-like file for use in genome browsers. There are also general purpose tools for genome annotation. GFF (generic feature format) is atab-delimited pseudoformatfor annotating genomes, consisting of 8...
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another. - bioconvert/bioconvert
pip install bcbio-gff 转换代码 Converting other formats to GFF3;只需要在脚本里面改成你的文件就可以了。 fromBCBioimportGFFfromBioimportSeqIOin_file="your_file.gb"out_file="your_file.gff"in_handle=open(in_file)out_handle=open(out_file,"w")GFF.write(SeqIO.parse(in_handle,"genbank"),out_...
Then run with theAUGUSTUSGFF (ensure this is GFF format and not GTF), instructing to use CDS features as exons with-x. Depending on version, theAUGUSTUSoutput might appear as below, where ID is not explicitly given in the attributes of the gene or transcripts (it just saysg1), but is ...