Triacylglycerides (TAGs) are the dominant form of lipids produced under these conditions. The excess production of TAGs in microalgae is thought to play a role in carbon and energy storage and functions as part of the cell’s stress response[5]. Due to the limited understanding of microalgae...
Magic-BLAST also attempts to produce spliced alignments if a read has several local alignments separated by one to ten unaligned bases. First, we look for a splice signal within four bases of the end of the left alignment and, if found, we fix the beginning of the candidate intron. Second...
scaffolding multiple proteins to form a complex, and regulating gene expression[2–11], however, most lncRNAs’ functions remain to be specified. During the past decade, a growing number of newly detected lncRNAs have been reported thanks to the development of relevant biotechnology and computational...
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Subgroup GPDP: The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009, 25: 2078-2079. 10.1093/bioinformatics/btp352. Article Google Scholar Zerbino DR, Birney E: Velvet: algorithms...
(E) domain responsible for altering the aa configuration from L to D form, N-methylation domain (nMT) responsible for transfer of the methyl group to the substrate may also be present in the NRPS module [38,57]. The number and order of these modules on each NRPS genes is known to ...
Repetitive elements comprise at least 55% of the human genome with more recent estimates as high as two-thirds. Most of these elements are retrotransposons, DNA sequences that can insert copies of themselves into new genomic locations by a “copy and pas
CLIP-seq is widely used to study genome-wide interactions between RNA-binding proteins and RNAs. However, there are few tools available to analyze CLIP-seq data, thus creating a bottleneck to the implementation of this methodology. Here, we present PIPE-
individual nodes (modules) using appropriate data. The result of this module definition step is an XML file (*.pipe) representing the tool invocation syntax, which can be broadly used, shared, modified, extended and integrated with other module descriptions to form complex graphical workflow ...
(Table S13). Phylogenetic analysis, based on 2,630 single-copy genes, constructed through maximum likelihood estimation, positionsD. delphisclosely withT. aduncusandT. truncatus, members of the subfamily Delphininae. Subsequently, these species form a cluster withG. griseusof the subfamily Globi...
Since the majority of CLE sequences are predicted to have an effect on the growth of the RAM, we used peptides that we expected to have an effect on the RAM based our grouping (Figure 2). We synthesized two peptides, peptide 1 (SKRKVPSCPDPLHN) and peptide 2 (SKRRVPNGPDPIHN). The...