Thompson, W., L. A. McCue and C. E. Lawrence, 2005 Using the Gibbs motif sampler to find conserved domains in DNA and protein sequences, in Current Protocols in Bioinformatics, Unit 2.8, Wiley-InterScience, New York.Thompson, W., McCue, L. A., and Lawrence, C. E. (2005) Using ...
Model that computes the probability of a protein to be an adhesin. The best predictor you will find for protein sequences ;) - nicolagulmini/spaan
In the human proteome work, they specified the exact properties, such as electric charge and sequence length that they believed mark a peptide. But in the ancient genome work, they used machine learning — the same technique deployed in AlphaFold and ChatGPT — to find more subtle qualities hu...
4.1. Set the Parameter File The main configuration file forpIonispIon.cfg. At a minimum, you need to set the paths to your FASTA file (protein sequence database) and your MS/MS data file(s).pIonsupports the following MS/MS data formats:RAW,MZML, orMGF. ...
In response to this need, we propose a novel method called FindCSV, which leverages deep learning techniques and consensus sequences to enhance the detection of SVs using long-read sequencing data. Compared to current methods, FindCSV performs better in detecting complex and simple structural variat...
Coordinated events are more likely to have a more substantial impact on protein function as a larger proportion of coding sequences are affected, but when using a splicing node representation, they are difficult to detect as one must find a stretch of consecutive nodes. Given the large number ...
For the completeness of this list, it is also necessary to site two major tools for the discovery and prediction of NPs from protein sequence data: antiSMASH [74] and PRISM [75]. Both are trained on, among others, NP data, but the latter is not provided directly to the public. ...
For the completeness of this list, it is also necessary to site two major tools for the discovery and prediction of NPs from protein sequence data: antiSMASH [74] and PRISM [75]. Both are trained on, among others, NP data, but the latter is not provided directly to the public. ...
(2005). Using the Gibbs motif sampler to find conserved domains in DNA and protein sequences. Curr Protoc Bioinformatics. Chapter 2:Unit 2.8.Thompson W, McCue LA, Lawrence CE. (2005) Using the Gibbs motif sampler to find conserved domains in DNA and protein sequences. Curr Protoc Bioinf 2...
input and the tool as a result will provide, user's sequence foll owed by its length, Conserved sequence found in that sequence and based on this conserved sequence the species may be included in one of three subfamilies of Leguminosa e family and is it of rbcL or matK protein sequence...