Fiji is meant to be distributed without source, to make the download as small as possible. In the basic version, Fiji is a portable application, i.e. it should run wherever you copy it. The starting point is the ImageJ launcher, which will launch Java, set up the environment, and call...
CITATION: If you use Lusca for your research, please be so kind to cite our publication: “Lusca: FIJI (ImageJ) based tool for automated morphological analysis of cellular and subcellular structures”. LICENSE: This program is free software; you can redistribute it and/or modify it. This pro...
Fiji (Fiji is Just ImageJ, http://fiji.sc/) is a distribution of ImageJ, that includes (amongst other things) a lot of plugins, some useful libraries and an updater to keep everything up to date. Amongst other things, it is made to facilitate inter-operability...
We present a software plugin to analyze and quantify spatial patterns of objects in images using the free open-source image-processing platform ImageJ [1] or its distribution Fiji [2]. The spatial arrangement of objects relative to each other is a rich source of phenotypic information. This ra...
The ImageJ/Fiji software provides a user-friendly and free alternative for parametric coding of digital subtraction angiography. Graphical Abstract Download: Download high-res image (239KB) Download: Download full-size image Introduction Digital subtraction angiography (DSA) digitally removes radio-opaque...
“Analysis of focal adhesions” performs a multi-step, multi-executable analysis of focal adhesions. It utilizes a download widget, an ImageJ macro for segmentation, and Jupyter notebooks for data analysis and visualization. Each module (widget) is isolated within its own software container, ...
To calculate the percentage of live cells, divide the number of spots detected in the green channel by the total number of green and red cells in the image and multiply by 100%. To analyze the next image, remember to delete all ROIs from the previous measurement. ...
MuscleJ2: a rebuilding of MuscleJ with new features for high-content analysis of skeletal muscle immunofluorescence slides Article Open access 23 August 2023 MyoSight—semi-automated image analysis of skeletal muscle cross sections Article Open access 16 November 2020 A new bio imagery user-fri...
$ curl -Ifs https://downloads.imagej.net/fiji/latest/fiji-win64.zip | grep 'Last-Modified' Last-Modified: Thu, 01 Dec 2022 15:46:43 GMT Would this work to discern the last modified date, to decide whether an update is needed? See also: Make it possible to complete disable the Ima...
If needed, use {% include bc path="Image | Adjust | Brightness / Contrast" %}, and set the min and max values, then close the Brightness / Contrast window. **Voxel sizes: ** using ImageJ, check the image properties {% include bc path="Image | Properties..." %} and correct the...