Labelling is done in Illustrator or some other software to assemble the final figure, not in ImageJ Workflows The basic workflow is to go: IMAGE(S) | | (Montage Maker or Montage Maker Directory) v MONTAGE(S) | | (Montage Compiler) v COMPILED MONTAGE Images can be XYC, XYCT or XYCZ...
all platforms supporting Java and a POSIX shell, via bin/ImageJ.sh The setup should be as easy as unpacking the (portable) application and starting the Java wrapper. The wrapper is a program that starts the Java machine hands-free, i.e. it sets the correct settings to start up ImageJ ...
to be distributed without source, to make the download as small as possible. In the basic version, Fiji is a portable application, i.e. it should run wherever you copy it. The starting point is the Fiji launcher, which will launch Java, set up the environment, and call ImageJ. To ...
Fiji (Fiji is Just ImageJ, http://fiji.sc/) is a distribution of ImageJ, that includes (amongst other things) a lot of plugins, some useful libraries and an updater to keep everything up to date. Amongst other things, it is made to facilitate inter-operability...
We present a software plugin to analyze and quantify spatial patterns of objects in images using the free open-source image-processing platform ImageJ [1] or its distribution Fiji [2]. The spatial arrangement of objects relative to each other is a rich source of phenotypic information. This ra...
An Insight into Cryo-EM Image Processing R&D based on Byte Code Engineering Analysis in the Context of [ OPAL-Scala Byte Code Engineering Tool/Scala LAB/ImageJ/Fiji] Software – A Simple & Interesting Exploration Using [ Scala/JikesRVM] ...
Our software provides a simple way to perform a batch processing of multiple microscopy files with minimal working time required from the user. Keywords: deconvolution microscopy; Fiji; image deconvolution; ImageJ; point spread function Introduction Fluorescence microscopy is one of the most commonly ...
**Voxel sizes: ** using ImageJ, check the image properties {% include bc path="Image | Properties..." %} and correct the 4 central values, if needed. Unit of length **should have another value than "pixel" ** (it can be "mm", "cm", "µm" for example). Check coherence of...
http://www.imagescience.org/meijering/software/featurej/ Stardist1and CSBDeep plugins (overlapping nuclei segmentation): https://imagej.net/StarDist GLCM2 plugin for texture analysis: https://github.com/miura/GLCM2/blob/master/target/GLCM2_-1.0.0.jar ...
CITATION: If you use Lusca for your research, please be so kind to cite our publication: “Lusca: FIJI (ImageJ) based tool for automated morphological analysis of cellular and subcellular structures”. LICENSE: This program is free software; you can redistribute it and/or modify it. This pro...