Download Overview Version History Reviews(23) Discussions(58) MIJ offers the missing link between imaging software: ImageJ, Fiji and Matlab. MIJ is a Java package mij.jar that provides static methods to convert images (2D) and volumes (3D) in Matlab arrays. MIJ allows also to access to all...
Labelling is done in Illustrator or some other software to assemble the final figure, not in ImageJ Workflows The basic workflow is to go: IMAGE(S) | | (Montage Maker or Montage Maker Directory) v MONTAGE(S) | | (Montage Compiler) v COMPILED MONTAGE Images can be XYC, XYCT or XYCZ...
Fiji (Fiji is Just ImageJ, http://fiji.sc/) is a distribution of ImageJ, that includes (amongst other things) a lot of plugins, some useful libraries and an updater to keep everything up to date. Amongst other things, it is made to facilitate inter-operability...
all platforms supporting Java and a POSIX shell, via bin/ImageJ.sh The setup should be as easy as unpacking the (portable) application and starting the Java wrapper. The wrapper is a program that starts the Java machine hands-free, i.e. it sets the correct settings to start up ImageJ ...
The ImageJ/Fiji software provides a user-friendly and free alternative for parametric coding of digital subtraction angiography. Graphical Abstract Download: Download high-res image (239KB) Download: Download full-size image Introduction Digital subtraction angiography (DSA) digitally removes radio-opaque...
We present a software plugin to analyze and quantify spatial patterns of objects in images using the free open-source image-processing platform ImageJ [1] or its distribution Fiji [2]. The spatial arrangement of objects relative to each other is a rich source of phenotypic information. This ra...
It utilizes a download widget, an ImageJ macro for segmentation, and Jupyter notebooks for data analysis and visualization. Each module (widget) is isolated within its own software container, enhancing reproducibility and re-usability by insulating it from changes to other modules and the operating ...
While current state-of-the-art software tools are unable to analyze all these parameters simultaneously, we have developed MuscleJ, a new bioinformatics tool to do so. Methods Running on the popular open source Fiji software platform, MuscleJ simultaneously analyzes parameters from immunofluorescent ...
To calculate the percentage of live cells, divide the number of spots detected in the green channel by the total number of green and red cells in the image and multiply by 100%. To analyze the next image, remember to delete all ROIs from the previous measurement. ...
The page https://imagej.net/software/fiji/downloads could work... How did you learn that 2.11.0 is the latest release? Due to use of the sc.fiji:fiji Maven artifact, perhaps? Author qgreen63 commented May 6, 2023 • edited I saw the version number in the "Vital Statistics" ...