fastqRNA-seqQuality controlPreprocessingSequence dataBackground RNA sequencing (RNA-seq) has become the standard means of analyzing gene and transcript expression in high-throughput. While previously sequence alignment was a time demanding step, fast alignment methods and even more so transcript counting...
Andrews S. FastQC: a quality control tool for high throughput sequence data. 2010. 14.05.2018 Available online at http://www.bioinformatics. babraham.ac.uk/projects/fastqc. Accessed 14 May 2018. 2. Ballenghien M, Faivre N, Galtier N. Patterns of cross-contamination in a multispecies ...
It is profiled in all the city guidebooks I could locate in print and online, featuring in some of these as a key stop on recommended itineraries (see, for instance, Otis 39). A number of these proclaim it to be the USA’s first ‘gastropub’—the term first used in 1991 in the ...
免费在线预览全文 From FastQ Data to High-Confidence UNIT 11.10 Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline Geraldine A. Van der Auwera,1 Mauricio O. Carneiro,1 Christopher Hartl,1 Ryan Poplin,1 Guillermo del Angel,1 Ami Levy-Moonshine,1 Tadeusz Jordan,1 Khalid Shakir...
MutScan is an open source tool available at GitHub:https://github.com/OpenGene/MutScan The online version of this article (10.1186/s12859-018-2024-6) contains supplementary material, which is available to authorized users.doi:10.1186/s12859-018-2024-6Chen, Shifu...
We propose, that hierarchical clustering of DNA k-mer counts provides an unspecific diagnostic tool for RNAseq experiments. Further exploration is required once samples are identified as outliers in HC derived trees. Keywords: DNA-kmer; Fastq; RNAseq ...