我用一个9G大小的SRA文件,分别以fastq-dump和fasterq-dump进行了测试。 time fastq-dump --split-3 -OtestSRR5318040.sra# 558.76s user 41.36s system 101% cpu 9:51.82 totaltime fasterq-dump --split-3 ./SRR5318040 -e 20 -o SRR5318040# 582.70s user 121.06s system 1130% cpu 1:02.25 total 从...
time fastq-dump--split-files-O~/tmpSRR1039510.sra real 2m4.557s user 1m40.961s sys 0m9.731s 代码语言:javascript 复制 time fasterq-dump-e16--split-files-O~/SRR1039510.sra real 1m4.481s user 1m30.515s sys 0m18.706s 可以看到,fasterq实际运行时间是1m4s,fastq是2m4s,确实快了不少,不过好像...
https://github.com/ncbi/sra-tools/wiki/HowTo:-fasterq-dump https://www./p/176809/ https://vip./d/215-如何使用fastq-dump转换sra格式 https://www./p/251020/#251029 https://github.com/ncbi/sra-tools https://github.com/ncbi/sra-tools/wiki/HowTo:-fasterq-dump https://github.com/ncbi...