def sort_fasta_sequences(fasta_file): sequences = {} current_sequence = "" with open(fasta_file, 'r') as file: for line in file: line = line.strip() if line.startswith(">"): if current_sequence: sequences[current_sequence_id] = current_sequence current_sequence_id = line[1:] ...
python bioinformatics genome biology assembly dna fasta sequence fastq Updated Jun 27, 2024 C bioSyntax / bioSyntax Star 253 Code Issues Pull requests Syntax highlighting for computational biology syntax-highlighting vim less bioinformatics pdb sublime-text computational-biology gedit vcf fasta bam ...
nameBrookhaven Protein Data Bank (1) pdb|entry|chainBrookhaven Protein Data Bank (2)entry:chain|PDBID|CHAIN|SEQUENCE Patents pat|country|number GenInfo Backbone Id bbs|number General database identifier gnl|database|identifier NCBI Reference Sequence ref|accession|locus Local Sequence identifier lcl|...
>gi|149243361|pdb|2PQU|G Chain G, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed To Single-Stranded 12-Mer Telomeric Dna 转自:http://boyun.sh.cn/bio/?p=1192
A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file. bioinformaticspdbprotein-data-bankfastafasta-formatfasta-files UpdatedJan 18, 2022 C k-mer similarity metrics for two fastx files ...
删除重复的Fasta -Python script to remove whole duplicate fasta sequences i.e identical sequence and header -input file must be in fasta format usage: python remove_duplicate_fasta.py inputfile outputfile 例子: python remove_duplicate_fasta.py test.fasta test_no_duplicates.fasta ...
for record in reader.records() { let record = record?; let id = record.id(); let seq = record.seq(); // 在这里可以对每个记录进行处理,比如打印id和序列 println!("ID: {}", id); println!("Sequence: {}", seq); } 在上述代码中,record.id()返回fasta记录的标识符,record.seq()返回...
m_cd->EraseSequences(); } 开发者ID:jackgopack4,项目名称:pico-blast,代码行数:64, 注:本文中的CRef::AsFastaString方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。
A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence. - ShahidIqb/PROST
a python package for fast random access to sequences from plain and gzipped FASTA/Q files pythonbioinformaticsgenomebiologyassemblydnafastasequencefastq UpdatedJun 27, 2024 C Syntax highlighting for computational biology syntax-highlightingvimlessbioinformaticspdbsublime-textcomputational-biologygeditvcffastabam...