# import a converter from bioconvert.fastq2fasta import FASTQ2FASTA # Instanciate with infile/outfile names convert = FASTQ2FASTA(infile, outfile) # the conversion itself: convert() Setting up and maintaining Bioconvert has been possible thanks to users and contributors. Thanks to all: ...
Convert from:abiabi-trimacecif-atomcif-seqresclustalemblfastafasta-2linefastqfastq-sangerfastq-solexafastq-illuminagckgenbankgbigigmtnexuspdb-seqrespdb-atomphdphylippirseqxmlsffsff-trimsnapgenestockholmswisstabqualuniprot-xmlxdnato:clustalemblfastafasta-2linefastqfastq-sangerfastq-solexafastq-illuminagenbank...
To view exon structure from a GFF file on a 3D protein structure, see instructions at myPDBcolor repo. Below is an example usinghuman nidogen1, with the structure fromAlphafold2: blast2gff This was a strategy to convert blast hits into gene models. The direction of the blast hit and the...
keys()[0] seq = pdb.getHierView()[bp_chid[bp1_chid_idx[i]]].getSequence() good = 1 except IndexError: pdb = parsePDB(bound_pro) seq = pdb.getHierView()[bp_chid[bp1_chid_idx[i]]].getSequence() pfamid=searchPfam(seq).keys()[0] good = 0 fetchPfamMSA(pfamid) pfam1....
To view exon structure from a GFF file on a 3D protein structure, see instructions at myPDBcolor repo. Below is an example usinghuman nidogen1, with the structure fromAlphafold2: blast2gff This was a strategy to convert blast hits into gene models. The direction of the blast hit and the...