(a) The phylogenetic tree of tomato and Arabidopsis DOF proteins was constructed by neighbour-joining algorithm. Tomato SlDOF9 and SlDOF2 group in the same clade than Dof5.8 and OBP1 Arabidopsis orthologues (emphasized in red). (b) Protein sequence alignment of SlDOF9 and SlDOF2 with the ...
We have developed an evolutionary model to study binding-site turnover that uses multiple sequence alignments to assess the evolutionary constraint on individual binding sites, and to map gain and loss events along a phylogenetic tree. We apply this model to study the evolutionary dynamics of ...
The shaded area highlights a monophyletic group that contains all present-day haplotypes carrying the risk allele at rs35044562 and the haplotypes of the three high-coverage Neanderthals. Arabic numbers show bootstrap support (100 replicates). The tree is rooted with the inferred ancestral human seq...
It used Random Forest analys is which is a classifier formed from a set of tree structure, where each tree is a random independent vector which has identical distribution and each tree comes from best unit. Generally, the method has better accuracy than individual classification. The unit of ...
curse of dimension k-d tree manifold random projection DOI: 10.1097/01.prs.0000364101.91492.9d 年份: 2009 收藏 引用 批量引用 报错 分享 全部来源 求助全文 Elsevier 相似文献Effect of hepatitis B virus X gene introduction on response to growth inhibition by transforming growth factor-β1: O ...
A phylogenetic tree was constructed to analyze the relationship between the ARF gene family in rice, Arabidopsis, and cultivated alfalfa (Fig. 2). The ARF gene family was divided into four large clades, where clade I contained the most MsARF (52) genes and was closely related to AtARF10/16...
Fig. 3 Analysis of conserved motifs and gene structures in the phylogenetic tree of 23 CqSPL genes. A A phylogenetic tree was constructed using the amino acid sequences of the quinoa SPL genes using the NJ method. B Exons and introns are shown as yellow rectangles and gray lines, respective...
Bark thickness, a key variable determining post-fire tree survival, usually increases with tree diameter. The cork oak ( Quercus suber) is an exception to this, as it is the only European tree where the commercial exploitation of bark (cork) occurs. Human management thus becomes the most infl...
a) Phylogenetic tree of the Runx family, with topology extracted from the EnsemblCompara tree. b) The EnsemblCompara tree was built using the TreeBeST algorithm (see methods). After removal of spurious sequences, the dataset for RUNX contains 188 sequences from the three paralogs (RUNX1, -2...
China has a vast land and abundant resources, and different regions have different resource endowments. In particular, the key factors that affecting the development of the forestry industry, such as climate, soil, and tree varieties, also have significant regional differences. However, on the one...