(a) The phylogenetic tree of tomato and Arabidopsis DOF proteins was constructed by neighbour-joining algorithm. Tomato SlDOF9 and SlDOF2 group in the same clade than Dof5.8 and OBP1 Arabidopsis orthologues (emphasized in red). (b) Protein sequence alignment of SlDOF9 and SlDOF2 with the ...
Tropospheric ozone (O3) may adversely affect tree growth, with critical levels for O3being exceeded in many parts of Europe. However, unequivocal evidence for O3-induced foliar injury on woody species under field conditions has only been found in a few places. Visible O3injury appears to occur ...
An artificial neural network, decision tree, logistic regression, naïve Bayes, random forest, and support vector machine were used to evaluate the major predictors of NEC. Among the six prediction models, logistic regression and random forest had the best performance (accuracy: 0.93 and 0.93, ...
Revising Caspi’s original model, Sharp and Wall (2018) propose that the developmental trajectory of the p-factor should encompass personality pathology in addition to internalizing and externalizing difficulties and thought disorders. Maladaptive personality traits are associated with internalizing and extern...
Marsan L, Sagot MF: Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification. J Comput Biol 2000, 7(1066–5277 (Print)):345–62. 10.1089/106652700750050826 Article CAS PubMed Google Scholar van Helden J, Andre ...
(A) Phylogenetic tree of Chinese cabbage, rice, and Arabidopsis GRF proteins. (B) Distribution of conserved motifs in Chinese cabbage, rice, and Arabidopsis GRF proteins. The GRF protein sequences of Chinese cabbage, Arabidopsis, and rice were obtained from the BRAD (http://brassicadb.org/...
The AP2 family also has a conserved YLG instead of the WLG and AEIRD found in ERFs [66, 68]. The Arabidopsis and rice sequences were chosen in order to facilitate the classification of AP2-EREBP sequences into clades. The phylogenetic tree for the AP2-EREBP family (shown in Figs. 2...
Then, all the nodes belonging to the shortest path tree are grouped as separate partitions for each cranking group, and the set of nodes within them is assumed to be mutually exclusive. Any other nodes that are connected to the shortest path tree by any edges within a set of excluded ...
A random forest decision tree (RF)-based regressor25 was trained for each TF on the raw binding data using the peak height in ampDAP-seq as a proxy for binding affinity after binding data was filtered for single motif occurrences. On average, 146,326 sequences, which contain the binding ...
· t(o1 −τD EA )(."IDnnc"oqnutreansct,hbeodtbhyththeeinptreensseintyceanofdtthheeaacvceerpatgoerlGifeFtPim) aesoaf Molecular modelling. The previously reported three-dimensional structure of the complex formed between didemnin B and elongation factor eEF1A1 in the GTP ...