Read-based PhaME phylogenetic analysis of two human fecal metagenomics samples. Maximum likelihood tree showing 53E. coliandShigellagenomes and the placement within the tree of the dominantE. colipresent in the two metagenomes. The tree was rooted using outgroupE. fergusoniiATCC 35469. Nodes with b...
Phylogenetic tree showing the evolutionary relationship of the Venus clam, Cyclina sinensis, to four closely related species (C. gigas, C. teleta, L. gigantea, H. robusta), based on RNA-seq data.Baoping, Pan
though the strength of the correlation was more similar at both time points (R2 = 0.23,P < 0.001 andR2 = 0.38,P < 0.001, for 45 min and 6 h respectively; Fig.8b). Altogether, these data indicate that expression of genes with more divergent postmating transcriptiona...
Phylogenetic tree of theCrocidura oliviericomplex. Final phylogenetic tree for members of theCrocidura oliviericomplex using one specimen per locality and per clade, with 156 individual specimens. Tree built using Bayesian Inference and data from three mitochondrial (16S, cytb and COI) and four nucle...
A phylogenetic tree for the genus is constructed based on allozyme frequency data and changes in pheromone composition are superimposed on this tree. We ... C Lfstedt,WM Herrebout,SBJ Menken - 《Chemoecology》 被引量: 406发表: 1991年 Variation and evolution of the citric-acid cycle: a genom...
One of the core questions in the field asks: how did a colonization event by a green algae over 450 mya lead to one of the most successful lineages on the tree of life? This question can best be answered using the comparative method, the first step of which is to gather genome-scale ...
or that they arose independently multiple times at distinct nodes, we constructed a phylogeny ofGeminins. The gene tree indicated that theGemininswere clustered into two categories based on the positions rather than the phylogenetic relationship between the species: the Z chromosome cluster and the ...
We extracted the phylogenetic tree topology and branch lengths (initially a set of 10,000 trees) used to correct subsequent phylogenetic analyses from Stein et al.16. During preliminary analyses a set of 100 trees (covering all major uncertainties in the Stein et al. phylogeny) was generated ra...
Bayesian inference (BI) phylogenetic tree based on concatenated mitochondrial 16S, COI, ND4 and CYTB genes; lineage partitions recovered from CYTB-based PTP analyses are presented besides the BI tree (only the CYTB dataset was utilized for PTP analyses because it contains more representative samples ...
Phylogenetic reconstruction forBacillus.A. Concatenated 814 translated genes of the core genome maximum likelihood (ML) phylogeny. Bootstrap values are shown.B. Genome Similarity Score (GSS) distance matrix plotted as a Neighbor-Joining tree.C. ML phylogeny using 16S rRNA.C. Concatenated 20 Conserve...