However in the literature, there is no evaluation of multiple alignment methods based on the comparison of their phylogenetic trees. This work evaluates the following eight aligners: ClustalX, T-Coffee, SAGA, MUSCLE, MAFFT, DIALIGN, ProbCons and Align-m, based on their phylogenetic trees (test...
TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees Comparisons of tree topologies provide relevant information in evolutionary studies. Most existing methods share the drawback of requiring a complete and e... MH Marina,G Toni - 《Nucleic Acids Research》 被引量: 63发表...
CTree has been designed for the quantification of clusters within viral phylogenetic tree topologies. Clusters are stored as individual data structures from which statistical data, such as the Subtype Diversity Ratio (SDR), Subtype Diversity Variance (SDV) and pairwise distances can be extracted. This...
1981. Comparison of phylogenetic trees. Math Biosci. 53(1):131–147. Rodrıguez-Ezpeleta N, Brinkmann H, Roure B, Lartillot N, Lang BF, Philippe H. 2007. Detecting and overcoming systematic errors in genome-scale phylogenies. Syst Biol. 56(3):389–399. Rota J, Wahlberg N. 2012...
MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754–755 (2001). 29. Qin, J. et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59–65 (2009). 30. Keeling, P. J. et al. The Marine Microbial Eukaryote Transcriptome ...
When a phylogenetic reconstruction does not result in one tree but in several, tree metrics permit finding out how far the reconstructed trees are from one another. They also permit to assess the accuracy of a reconstruction if a true tree is known. TreeCmp implements eight metrics that can ...
Based on their morphology, Anabaena strains differed from strains of Aphanizomenon: the vegetative cells, heterocysts and akinetes were significantly wider in Anabaena than in Aphanizomenon. Phylogenetic trees based on the 16S rDNA, ITS1 and rbcLX regions showed that the planktic Anabaena strains ...
7.Compariative Study of Mitochondrial tRNA Genes and Control Region Sequence Among Birds;鸟类线粒体tRNA基因及调控区序列比较研究 8.Comparison of Biological Sequences/structures and Construction of Phylogenetic Trees;生物序列/结构的比较及进化树的构建 9.The Comparison of DNA Sequences and the Enumeration...
8.Comparison of Biological Sequences/structures and Construction of Phylogenetic Trees;生物序列/结构的比较及进化树的构建 9.Comparison between the Structures of Ancient and Modern Chinese Clothing;中国古代服装结构与现代服装结构之比较 10.A Comparison between Capital Structure,Coporate Goverance and Financing...
The method uses a real DNA coding sequence as the starting point, simulates mutation according to the mutational spectrum of -including base substitutions, insertions, and deletions-and separates the processes of mutation and selection. Trees of 8, 16, 32, and 64 taxa were simulated with ...