This provides an objective procedure for comparing the different methods for constructing phylogenetic trees. The metric is based on elementary operations which transform one tree into another. Various results obtained in applying these operations are given. They enable the distance between any pair of ...
Discriminative measures for comparison of phylogenetic trees. Technical report, University Of Pennsylvania, 2013. http://arxiv.org/abs/1310.5202. 3, 7Arslan, O., Guralnik, D. P., and Koditschek, D. E., "Discriminative measures for comparison of phylogenetic trees," Discrete Applied Mathematics...
Comparison of Phylogenetic Trees and Search for a Central Trend in the 'Forest of Life'. The widespread exchange of genes among prokaryotes, known as horizontal gene transfer (HGT), is often considered to 'uproot' the Tree of Life (TOL). Indeed... Koonin,Eugene,V.,... - 《Journal of ...
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Nucleotide sequences were aligned with 33 previously published capsid sequences and phylogenetic analyses were performed. Neighbor-joining trees were constructed for the P1, 1A (VP4), 1B (VP2), 1C (VP3) and 1D (VP1) regions. Additionally trees were determined for...
However, its phylogenetic relationship has been seldom reported. To this end, we carried out a systemic analysis of 95 animal U1-70K genes and compare these proteins to their yeast and plant counterparts. Analysis of their gene and protein structures, expression patterns and splicing conservation ...
Phylogenetic profiling encompasses an important set of methodologies for in silico high throughput inference of functional relationships between genes. The simplest profiles represent the distribution of gene presence-absence in a set of species as a seq
[5]. While algorithms like PhyML might be more efficient at resolving deep roots in phylogenetic trees, they seem to be less able to discriminate among recently separated taxa. The majority rule that we have applied here for the phylogenetic methods is quite rapid and allows us to perform ...
The variability between the three different types of phylogenetic trees makes it impossible to definitely answer the question whether chloroplast targeting was established independently for different chloroplast paralogs or prior to the final gene duplication event. The phylogenetic trees, however, suggest ...