d, Reconstructed phylogenetic tree from shared and private base substitutions in four evolved clonal lineages. Length of branches corresponds to the number of newly acquired base substitutions. Colors indicate mutational signature composition. e, Rates of mutation (SNVs), indel and non-centromeric SV ...
Thus, we accounted for influences from the total greenspace coverage on canopy temperature rather than the tree coverage alone. Figure 3 Estimated effects of urban greenspaces, distance to waterbodies, and building height on the spatial and diurnal patterns of \(\Delta LST_{Canopy}\); the ...
The results of the approximately unbiased (AU) test indicated that 39 out of 260 genes rejected the concatenated tree. Thepvalue heatmap (Figure5a) indicates that some gene trees showed the same or very similar histories, depicted by groups of topologies with a similarpvalue pattern (for examp...
Representatives from different groups including bacteria, fungi, protists, and animals were selected for phylogenetic analysis, and a multiple alignment of the respective protein sequences was constructed using the MUSCLE program [20]. A maximum likelihood phylogenetic tree was constructed using the Tree...
(B) Maximum-likelihood phylogenetic tree of L. chinensis accessions and model-based clustering with K from 2 to 4. The accession IDs are color labeled to indicate their geographic locations. Each accession is represented by a vertical bar. Each color in the bars represents one ancestral populatio...
(a) Tree constructed by neighbor-joining method. Branch lengths calculated using Kimura's two-parameter method are shown above the corresponding branches. (b) Tree constructed by maximum likelihood method. Branch lengths calculated by baseml in PAML package using 'HKY85' method were shown above ...
Phylogenomic tree inferred using the formula D6 (GBDP_Trimming_D6_FASTME). The numbers above branches are bootstrap support values from 100 replications Full size image Pathogenesis One could observe some basic structural similarities in all the three zoonotic HCoV; however, the genome sequence and...
The world-wide 'fast-slow' plant economics spectrum: a traits manifesto. (Special Feature: The tree of life in ecosystems: evolution of plant effects on ca... The leaf economics spectrum (LES) provides a usefu Reich.,P.,B - 《Journal of Ecology》 被引量: 134发表: 2014年 The world-...
Obviously, the TaCAF1Ia1 is a non-typical CAF1 gene (Fig. 1a). Phylogenetic tree showed that all TaCAF1s of wheat were clustered into 6 clades, and most of them in the same clade were from the same chromosome group. Both clades I and II could be further divided into two subgroups ...
c Phylogenetic tree of TET1, DNMT1, UHRF1, and DPPA3 in metazoa. d Dppa3 expression levels as determined by RNA-seq in the indicated ESC and EpiLC lines (n = 4 biological replicates). e TET proteins bind and actively demethylate the Dppa3 locus. Genome browser view of the Dpp...