Ensembl数据库的结构设计合理,内容丰富。它针对不同类型的物种建立了对应的数据库,如EnsemblMetazoa(动物)、EnsemblProtists(原生生物)、EnsemblPlants(植物)、EnsemblFungi(真菌)和EnsemblBacteria(细菌)等。这些数据库分别收录了相应物种的基因组信息,包括基因序列、转录本信息、变体数据等。用户可以根...
可能有人会问只有序列怎么通过ensembl寻找同源基因,这个可以通过Ensembl的BLAST/BLAT功能来寻找序列对应的基因,BLAST/BLAT功能的位置在下图的红框中进行标出: 最后简单介绍一下Ensembl网站,以上分析用到的网站是Ensembl的主网站,里面主要收录的是脊索动物的数据,它还有其他5个子网站,分别是Ensembl Bacteria、Ensembl Fungi...
Go to Ensembl Fungi EnsemblMetazoa Caenorhabditis elegans WBcel235 Drosophila melanogaster BDGP6.28 Bombyx mori ASM15162v1 Go to Ensembl Metazoa EnsemblCOVID-19 SARS-CoV-2Genome sequence & annotation dataGo EnsemblRapid Release 2-weekly releases of new assemblies ...
Ensembl Bacteria [3], Protists [4], Fungi [5], Plants [6] and Metazoa [7] (collectively, 'Ensembl Genomes [8]') are five portals for genome-scale data, developed in close collaboration with scientific communities expert in the biology of individual species. Implemented using the Ensembl ...
fungi.ensembl.org Ensembl Fungi Acremonium chrysogenum ATCC 11550. Agaricus bisporus var. burnettii JB137-S8. Allomyces macrogynus ATCC 38327. Amanita muscaria Koide BX008. Amphiamblys sp. WSBS2006. Arthrobotrys oligospora ATCC 24927. Arthroderma otae CBS 113480. Aschersonia aleyrodis RCEF...
Combining information held in Ensembl with the related Ensembl Genomes resource for the genomes of bacteria,fungi21(真菌), plants,metazoa(后生动物,复细胞动物)andprotists(原生动物)launched by EMBL-EBI last year, every sequenced genome provides anotherjigsaw22(线锯,镂花锯)piece in cataloguing the gene...
Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. Many of the databases supporting the portal have been built in close collaboration with the scientific community, ...
Ensembl Plants complements the coverage of animals in Ensembl, of plant pathogens in Ensembl Fungi and Ensembl Protists, and plant pests in Ensembl Metazoa, providing a common route of access to genomes of agricultural importance from across the taxonomic space. 展开 ...
("https://protists.ensembl.org/", "https://fungi.ensembl.org/", "https://metazoa.ensembl.org/", "https://plants.ensembl.org/") } else { hosts <- host } http_config <- .getEnsemblSSL() marts <- lapply(hosts, FUN = function(x) { as.data.frame( .listMarts(host = x, mart...
EasyMirror (https://github.com/lepbase/easy-mirror) makes it possible to set up a mirror of any Ensembl or Ensembl Genomes (including Bacteria, Metazoa, Fungi, Plants and Protists) species in four simple steps that can be run in less than an hour on a fresh Ubuntu installation. This ...