Plot the most basic volcano plotFor the most basic volcano plot, only a single data-frame, data-matrix, or tibble of test results is required, containing point labels, log2FC, and adjusted or unadjusted P values. The default cut-off for log2FC is >|2|; the default cut-off for P ...
For each of the four vector types, the resulting volcano plots (Figure S10) were highly consistent with those obtained from the initial analysis (Figure 2). ISGs were again upregulated in CARneg T cells and DUSP2/DUSP4 in CARpos T cells (Figure S10). In these patient datasets, the ...
Volcano plot comparing s-µg against the 1-g condition. Gray dots represent the E. coli proteome and the blue dots correspond to T7 phage proteins with names of selected T7 proteins. e Quantification of the T7 genome copy number by qRT-PCR showed no effect of s-µg on T7 genome...
Data in boxplots are shown as median values (center) with the interquartile range (box), and the whiskers extend to 1.5 times the interquartile range. Full size image Multiscale single-cell and tissue imaging data integration Our high-throughput multiscale tissue MSI and SCMS data enabled ...
Transcriptomic and proteomic changes during bio-electrochemical fermentation ofP. putidaKT2440 on glucose. Volcano plot of global transcriptomic differences between 0 h (T0) and 24 h (T1) (A). Assignment of transcriptional changes between 0 h and 24 h to GO biological processes (Gene Ontology),...
B Volcano plots from DNA methylation 850 k chip showing significantly differential DNA methylation sites in sh-DNMT1 cells compared to sh-NC Cal27 cells. C Ridge plot showing the β value distribution of the top 3000 significantly differential sites in sh-DNMT1 and sh-NC Cal27 cells. D ...
A volcano plot is derived to describe the relationship between the catalytic activities and gap size of the PGN nanocatalysts, which is well explained by the interplay of their light harvesting and charge transport capabilities. These results highlight the importance of gap engineering in PGNs for ...
The volcano plot was drawn by GraphPad Prism 9.0.0. The vein plot was online completed by DeepVein (http://www.deepvenn.com/). GO analysis was performed using online agriGO database v2.0 [38]. The gene co-expression heatmap was constructed by using pheatmap of R documentation. Data ...
C, Volcano plot showing the differentially expressed genes according to the log fold change in α-CD99-A192 treated T cells compared with control A192 treated T cells. D, Plot showing NES and False Discovery Rate (FDR) q-values derived from GSEA using relevant gene signatures in α-CD99-...
b Volcano plot of biotinylated proteins in PKCλ/ι-BioID2 versus Empty-BioID2 in 293 T cells (n = 3 biological replicates). c Immunoblotting of cell lysate and FLAG-tagged immunoprecipitates of 293 T cells transfected with indicated plasmids. d, e Pulse-chase assay with 50 μ...