eFP-Seq-Browser The eFP-Seq Browser is an RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with an "electronic fluorescent pictographic" (eFP) image. This web-tool also allows the generation of new datasets if provided with SAM/BAM (with their index...
5and this new RNA-seq data set on ripening-stage receptacle. With a combined total of 46 different tissues, each with two biological replicates (46×2=92 RNA-seq libraries), this eFP browser for wild strawberry enables
2017. An eFP browser for visualizing strawberry fruit and flower transcriptomes. Horticulture Research 4:17029 DOI 10.1038/hortres.2017.29.Hawkins C, Caruana J, Li J, Zawora C, Darwish O, Wu J, Alkharouf N, Liu Z. 2017. An eFP browser for visualizing strawberry fruit and flower ...
We present here a user-friendly RNA-seq data exploration tool, called the 'eFP-Seq Browser', that shows the read map coverage of a gene of interest in each of the samples along with 'electronic fluorescent pictographic' (eFP) images that serve as visual representations of expression levels....
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level. bioinformaticsrna-seqdatabasedata-visualizationwebappalternative-splicingbamarabidopsisefprna-seq-mappingarabidopsis-th...
The RNA-seq data are from dissected fruit tissues: each achene is dissected into three subtissues: the protective carpel wall (or ovary wall), the embryo and the ghost (the seed coat and endosperm), whereas the receptacle is Horticulture Research (2017) An eFP browser for visualizing ...
eFP-Seq_Browser:一种RNA-Seq数据探索工具,可根据其RPKM表达水平显示目标基因的阅读图谱以及彩色的“电子荧光象形图”(eFP) eFP-Seq-浏览器 eFP-Seq浏览器是一种RNA-Seq数据探索工具,可显示感兴趣的基因的阅读图谱以及“电子荧光象形”(eFP)图像。 如果随SAM / BAM(及其索引文件)一起提供,此网络工具还可以生成新...
处理大型RNA-seq数据集的工具eFP‐Seq Browser实现了用户友好的基因表达分析和可视化。说起可视化工具,大家最熟悉的当属TAIR的eFP‐Seq Browser工具: 或者是 近日,来自加拿大多伦多大学的研究人员在Plant Journal发表了标题为“An “eFP‐Seq Browser” for Visualizing and Exploring RNA‐Seq Data”的文章,推出了一款...
eFP-Seq浏览器是一种RNA-Seq数据探索工具,可显示感兴趣的基因的阅读图谱以及“电子荧光象形”(eFP)图像。 如果随SAM / BAM(及其索引文件)一起提供,此网络工具还可以生成新的数据集,以可视化任何RNA-Seq映射覆盖范围。 基因表达水平和相似性还通过计算其不同剪接变体之间的每千碱基对读数/百万个读图映射(RPKM)表达...
An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data Improvements in next-generation sequencing technologies have resulted in dramatically reduced sequencing costs. This has led to an explosion of '-seq'-base... A Sullivan,PK Purohit,NH Freese,... - 《Plant Journal for Cell...